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Report for CCDS41553.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41553.1 Public Homo sapiens 10 TBC1D12 24 110 108 CCDS HistoryNCBI Gene:23232Re-query CCDS DB by CCDS ID:41553.1Re-query CCDS DB by GeneID:23232See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41553.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000225235.5 ENSP00000225235.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000225235.5Link to Ensembl Protein Viewer:ENSP00000225235.4Re-query CCDS DB by Nucleotide ID:ENST00000225235Re-query CCDS DB by Protein ID:ENSP00000225235
Original member Current member NCBI NM_015188.2 NP_056003.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015188.2Link to Protein Sequence:NP_056003.1Re-query CCDS DB by Nucleotide ID:NM_015188Re-query CCDS DB by Protein ID:NP_056003Link to BLAST:NP_056003.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056003.1 775 O60347 775 100% 0 0

Chromosomal Locations for CCDS 41553.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 94402614 94403584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94441896 94442019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94474668 94474783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94493365 94493447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94497055 94497172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94500221 94500327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94507267 94507347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94510091 94510179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94511583 94511654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94521955 94522083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94522344 94522453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94531202 94531460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94533028 94533096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2328 nt):
ATGGTGGGTCCGGAGGATGCCGGAGCCTGCTCGGGAAGAAACCCCAAGTTGCTCCCGGTGCCTGCGCCGG
ACCCCGTGGGCCAGGACAGGAAGGTAATCCGGGCCACGGGCGGCTTTGGCGGAGGCGTCGGCGCTGTGGA
GCCGCCGGAGGAGGCTGACGAGGAGGAGGAGGCTGACGAGGAGGAGGAGACGCCGCCTCGGCAGCTCCTT
CAGCGTTACCTCGCGGCGGCCGGGGAGCAGCTGGAGCCGGGGCTCTGCTACTGTCCGCTCCCCGCTGGCC
AGGCCGGCGCCCCGCCGCCCTCGGCAGCCCCACGATCGGACGCCTGCCTGCTGGGCTCGGGCTCCAAACA
CCGCGGCGCGGAGGTGGCTGATGGCCGCGCGCCGCGGCACGAAGGCATGACCAACGGCGACTCGGGTTTT
CTGCCGGGCCGGGACTGTCGCGATCTGGAAGAGGCTCGCGGGCTGGCGCGCGCCGGCGGCCGGGAGTCGC
GCCGCCGCCGCCCCTACGGCCGCCTTCGCCTGGAGGGGCCTGGCGACGAGGACGCGGACGGCGCGGGAAG
CCCGTCCGATTGGGCCTCTCCGCTTGAGGACCCGCTGCGGAGCTGCTGCCTGGTGGCCGCGGACGCCCAG
GAGCCCGAGGGCGCGGGCAGCGACTCGGGGGACAGCCCCGCCAGCAGCTGCAGCAGTAGCGAGGACTCAG
AGCAGCGGGGAGTCGGCGCCGGGGGTCCCGAGGAGGGCGCGCCCCCTGCCACCTCGGCCGAGAGGACTAA
TGGGGGTGCGGAGCCGCGCCTGGGCTTTTCTGACATTCACTTCAACTCTCGCAACACGTTCCAGGTGAGC
CGCGGTCAGAGCGCCCGCGATCACCTGCCCCCGGCGGGGCCGCCGGTGCCCTTGCCCGCCGCGGAGCAGG
GTCCTGCGGGGGCTTCGGCCCGGGCTCGACGGAGTGGCGGCTTCGCGGACTTCTTCACCAGAAACCTTTT
TCCAAAAAGGACAAAGGAACTCAAATCAGTTGTCCATAGTGCTCCTGGTTGGAAATTATTTGGTAAAGTC
CCTCCTAGAGAGAATCTTCAGAAAACATCCAAAATCATTCAGCAGGAATATGAAGCACGAACGGGGAGGA
CCTGTAAACCACCACCTCAGTCTTCAAGACGCAAGAATTTTGAATTTGAGCCGCTTTCTACCACTGCCTT
GATTCTTGAGGATCGACCATCAAATCTTCCTGCCAAATCTGTGGAAGAAGCTTTACGTCACCGACAAGAA
TACGATGAGATGGTGGCTGAGGCTAAAAAACGAGAAATTAAGGAAGCACATAAAAGAAAAAGAATCATGA
AAGAACGATTTAAGCAGGAAGAAAATATTGCAAGTGCAATGGTAATTTGGATCAATGAAATACTGCCCAA
TTGGGAAGTAATGCGTAGTACAAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGT
GGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTGAACTTTATGAAATCTTCCTCT
CAAGAGCAAAAGAACGGTGGAAAAGTTTCAGTGAAACAAGTTCAGAGAATGATACAGAAGGTGTATCTGT
TGCTGATCGAGAGGCCAGTCTGGAATTAATTAAGTTGGACATATCCCGTACATTTCCATCTCTCTACATC
TTTCAGAAGGGTGGTCCATATCATGATGTCTTGCATAGTATTTTAGGGGCATACACATGCTACAGGCCTG
ATGTTGGTTATGTCCAAGGGATGTCCTTCATTGCAGCAGTACTCATTCTCAATTTGGAAGAGGCAGATGC
CTTTATCGCATTTGCCAATCTCCTGAATAAGCCATGCCAGTTGGCCTTTTTTCGTGTGGATCACAGCATG
ATGTTGAAATATTTTGCAACATTTGAAGTATTCTTTGAAGAAAATCTTTCCAAATTATTTCTTCACTTCA
AATCTTACAGTCTTACACCAGATATATACTTGATAGACTGGATCTTCACACTATATAGCAAATCACTACC
ACTTGATCTGGCCTGTCGAGTCTGGGATGTATTTTGCAGAGATGGGGAAGAATTTTTATTTAGGACTGGA
TTAGGAATCCTCCGATTATATGAAGATATTCTCCTGCAGATGGACTTTATTCATATAGCACAGTTTCTAA
CTAAATTGCCAGAAGATATCACATCGGAAAAGCTGTTCAGTTGTATTGCAGCCATTCAGATGCAGAATAG
CACCAAAAAATGGACTCAGGTCTTTGCATCTGTAATGAAGGATATTAAAGAAGGAGACAAGAACAGTAGT
CCTGCTTTGAAAAGCTAG

Translation (775 aa):
MVGPEDAGACSGRNPKLLPVPAPDPVGQDRKVIRATGGFGGGVGAVEPPEEADEEEEADEEEETPPRQLL
QRYLAAAGEQLEPGLCYCPLPAGQAGAPPPSAAPRSDACLLGSGSKHRGAEVADGRAPRHEGMTNGDSGF
LPGRDCRDLEEARGLARAGGRESRRRRPYGRLRLEGPGDEDADGAGSPSDWASPLEDPLRSCCLVAADAQ
EPEGAGSDSGDSPASSCSSSEDSEQRGVGAGGPEEGAPPATSAERTNGGAEPRLGFSDIHFNSRNTFQVS
RGQSARDHLPPAGPPVPLPAAEQGPAGASARARRSGGFADFFTRNLFPKRTKELKSVVHSAPGWKLFGKV
PPRENLQKTSKIIQQEYEARTGRTCKPPPQSSRRKNFEFEPLSTTALILEDRPSNLPAKSVEEALRHRQE
YDEMVAEAKKREIKEAHKRKRIMKERFKQEENIASAMVIWINEILPNWEVMRSTRRVRELWWQGLPPSVR
GKVWSLAVGNELNITPELYEIFLSRAKERWKSFSETSSENDTEGVSVADREASLELIKLDISRTFPSLYI
FQKGGPYHDVLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLEEADAFIAFANLLNKPCQLAFFRVDHSM
MLKYFATFEVFFEENLSKLFLHFKSYSLTPDIYLIDWIFTLYSKSLPLDLACRVWDVFCRDGEEFLFRTG
LGILRLYEDILLQMDFIHIAQFLTKLPEDITSEKLFSCIAAIQMQNSTKKWTQVFASVMKDIKEGDKNSS
PALKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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