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Report for CCDS4167.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4167.1 Public Homo sapiens 5 C5orf15 24 110 108 CCDS HistoryNCBI Gene:56951Re-query CCDS DB by CCDS ID:4167.1Re-query CCDS DB by GeneID:56951See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4167.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000231512.5 ENSP00000231512.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000231512.5Link to Ensembl Protein Viewer:ENSP00000231512.3Re-query CCDS DB by Nucleotide ID:ENST00000231512Re-query CCDS DB by Protein ID:ENSP00000231512
Original member Current member NCBI NM_020199.3 NP_064584.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020199.3Link to Protein Sequence:NP_064584.1Re-query CCDS DB by Nucleotide ID:NM_020199Re-query CCDS DB by Protein ID:NP_064584Link to BLAST:NP_064584.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064584.1 265 Q8NC54 265 100% 0 0

Chromosomal Locations for CCDS 4167.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 133956859 133956990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133959494 133960020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133968446 133968584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (798 nt):
ATGGCCGCTGCCGTCCCGAAGAGGATGAGGGGGCCAGCACAAGCGAAACTGCTGCCCGGGTCGGCCATCC
AAGCCCTTGTGGGGTTGGCGCGGCCGCTGGTCTTGGCGCTCCTGCTTGTGTCCGCCGCTCTATCCAGTGT
TGTATCACGGACTGATTCACCGAGCCCAACCGTACTCAACTCACATATTTCTACCCCAAATGTGAATGCT
TTAACACATGAAAACCAAACCAAACCTTCTATTTCCCAAATCAGCACCACCCTCCCTCCCACGACGAGTA
CCAAGAAAAGTGGAGGAGCATCTGTGGTCCCTCATCCCTCGCCTACTCCTCTGTCTCAAGAGGAAGCTGA
TAACAATGAAGATCCTAGTATAGAGGAGGAGGATCTTCTCATGCTGAACAGTTCTCCATCCACAGCCAAA
GACACTCTAGACAATGGCGATTATGGAGAACCAGACTATGACTGGACCACGGGCCCCAGGGACGACGACG
AGTCTGATGACACCTTGGAAGAAAACAGGGGTTACATGGAAATTGAACAGTCAGTGAAATCTTTTAAGAT
GCCATCCTCAAATATAGAAGAGGAAGACAGCCATTTCTTTTTTCATCTTATTATTTTTGCTTTTTGCATT
GCTGTTGTTTACATTACATATCACAACAAAAGGAAGATTTTTCTTCTGGTTCAAAGCAGGAAATGGCGTG
ATGGCCTTTGTTCCAAAACAGTGGAATACCATCGCCTAGATCAGAATGTTAATGAGGCAATGCCTTCTTT
GAAGATTACCAATGATTATATTTTTTAA

Translation (265 aa):
MAAAVPKRMRGPAQAKLLPGSAIQALVGLARPLVLALLLVSAALSSVVSRTDSPSPTVLNSHISTPNVNA
LTHENQTKPSISQISTTLPPTTSTKKSGGASVVPHPSPTPLSQEEADNNEDPSIEEEDLLMLNSSPSTAK
DTLDNGDYGEPDYDWTTGPRDDDESDDTLEENRGYMEIEQSVKSFKMPSSNIEEEDSHFFFHLIIFAFCI
AVVYITYHNKRKIFLLVQSRKWRDGLCSKTVEYHRLDQNVNEAMPSLKITNDYIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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