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Report for CCDS41676.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41676.1 Public Homo sapiens 11 RBM4 24 110 108 CCDS HistoryNCBI Gene:5936Re-query CCDS DB by CCDS ID:41676.1Re-query CCDS DB by GeneID:5936See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41676.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310092.12 ENSP00000309166.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000310092.12Link to Ensembl Protein Viewer:ENSP00000309166.8Re-query CCDS DB by Nucleotide ID:ENST00000310092Re-query CCDS DB by Protein ID:ENSP00000309166
Original member Current member EBI ENST00000408993.6 ENSP00000386561.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000408993.6Link to Ensembl Protein Viewer:ENSP00000386561.2Re-query CCDS DB by Nucleotide ID:ENST00000408993Re-query CCDS DB by Protein ID:ENSP00000386561
Original member Current member EBI ENST00000409406.1 ENSP00000386894.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409406.1Link to Ensembl Protein Viewer:ENSP00000386894.1Re-query CCDS DB by Nucleotide ID:ENST00000409406Re-query CCDS DB by Protein ID:ENSP00000386894
Original member Current member NCBI NM_002896.4 NP_002887.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002896.4Link to Protein Sequence:NP_002887.2Re-query CCDS DB by Nucleotide ID:NM_002896Re-query CCDS DB by Protein ID:NP_002887Link to BLAST:NP_002887.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002887.2 364 Q9BWF3-1 364 100% 0 0

Chromosomal Locations for CCDS 41676.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 66639712 66640123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66643450 66644132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGGTGAAGCTGTTCATCGGAAACCTGCCCCGGGAGGCTACAGAGCAGGAGATTCGCTCACTCTTCGAGC
AGTATGGGAAGGTGCTGGAATGTGACATCATTAAGAATTACGGCTTTGTGCACATAGAAGACAAGACGGC
AGCTGAGGATGCCATACGCAACCTGCACCATTACAAGCTTCATGGGGTGAACATCAACGTGGAAGCCAGC
AAGAATAAGAGCAAAACCTCAACAAAGTTGCATGTGGGCAACATCAGTCCCACCTGCACCAATAAGGAGC
TTCGAGCCAAGTTTGAGGAGTATGGTCCGGTCATCGAATGTGACATCGTGAAAGATTATGCCTTCGTACA
CATGGAGCGGGCAGAGGATGCAGTGGAGGCCATCAGGGGCCTTGATAACACAGAGTTTCAAGGCAAACGA
ATGCACGTGCAGTTGTCCACCAGCCGGCTTAGGACTGCGCCCGGGATGGGAGACCAGAGCGGCTGCTATC
GGTGCGGGAAAGAGGGGCACTGGTCCAAAGAGTGTCCGATAGATCGTTCAGGCCGCGTGGCAGACTTGAC
CGAGCAATATAATGAGCAATACGGAGCAGTGCGTACGCCTTACACCATGAGCTATGGGGATTCATTGTAT
TACAACAACGCGTACGGAGCGCTCGATGCCTACTACAAGCGCTGCCGTGCTGCCCGGTCCTATGAGGCAG
TGGCAGCTGCAGCTGCCTCCGTGTATAATTACGCAGAGCAGACCCTGTCCCAGCTGCCACAAGTCCAGAA
TACAGCCATGGCCAGTCACCTCACCTCCACCTCTCTCGATCCCTACGATAGACACCTGTTGCCGACCTCA
GGAGCTGCTGCCACAGCTGCTGCTGCAGCAGCAGCCGCTGCTGCTGTTACTGCAGCTTCCACTTCATATT
ACGGGCGGGATCGGAGCCCCCTGCGTCGCGCTACAGCCCCAGTCCCCACTGTTGGAGAGGGCTACGGTTA
CGGGCATGAGAGTGAGTTGTCCCAAGCTTCAGCAGCCGCGCGGAATTCTCTGTACGACATGGCCCGGTAT
GAGCGGGAGCAGTATGCCGATCGGGCGCGGTACTCAGCCTTTTAA

Translation (364 aa):
MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS
KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR
MHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLY
YNNAYGALDAYYKRCRAARSYEAVAAAAASVYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTS
GAAATAAAAAAAAAAVTAASTSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARY
EREQYADRARYSAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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