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Report for CCDS41689.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41689.1 Public Homo sapiens 11 FAM168A 24 110 108 CCDS HistoryNCBI Gene:23201Re-query CCDS DB by CCDS ID:41689.1Re-query CCDS DB by GeneID:23201See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41689.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356467.5 ENSP00000348852.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356467.5Link to Ensembl Protein Viewer:ENSP00000348852.4Re-query CCDS DB by Nucleotide ID:ENST00000356467Re-query CCDS DB by Protein ID:ENSP00000348852
Original member Current member NCBI NM_015159.3 NP_055974.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015159.3Link to Protein Sequence:NP_055974.1Re-query CCDS DB by Nucleotide ID:NM_015159Re-query CCDS DB by Protein ID:NP_055974Link to BLAST:NP_055974.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055974.1 235 Q92567-2 235 100% 0 0

Chromosomal Locations for CCDS 41689.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73407531 73407643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73409487 73409661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73411394 73411536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73419874 73419999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73430690 73430770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73468405 73468474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGAACCCTGTTTACAGCCCCGTGCAGCCTGGGGCTCCTTATGGCAACCCTAAGAACATGGCCTACACGG
GTTACCCCACAGCCTATCCAGCAGCTGCCCCTGCCTACAATCCCAGCCTGTACCCCACCAATAGTCCCAG
TTATGCTCCAGCAACTCTGCTGATGAAACAGGCCTGGCCACAGAACTCGTCTTCCTGTGGCACTGAAGGC
ACCTTCCACCTCCCAGTGGACACCGGGACCGAGAACCGAACTTACCAAGCATCCTCTGCGGCTTTCAGAT
ATACTGCGGGGACACCATACAAGGTCCCACCGACCCAGAGTAACACTGCTCCACCCCCCTACTCCCCATC
ACCCAACCCCTATCAGACGGCCATGTATCCAATCAGAAGTGCCTACCCCCAGCAGAATCTGTATGCCCAG
GGAGCCTACTACACACAGCCGGTGTATGCTGCCCAGCCTCATGTCATCCACCATACCACGGTCGTCCAGC
CCAACAGCATTCCCTCTGCTATCTACCCAGCACCTGTTGCCGCCCCGAGGACCAACGGTGTGGCCATGGG
CATGGTGGCAGGCACCACCATGGCAATGTCAGCAGGTACCCTGCTGACTACACCCCAGCACACGGCGATT
GGGGCACACCCTGTCTCCATGCCAACATATAGGGCCCAAGGAACCCCTGCGTACAGCTACGTGCCCCCAC
ACTGGTAA

Translation (235 aa):
MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAPATLLMKQAWPQNSSSCGTEG
TFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAPPPYSPSPNPYQTAMYPIRSAYPQQNLYAQ
GAYYTQPVYAAQPHVIHHTTVVQPNSIPSAIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAI
GAHPVSMPTYRAQGTPAYSYVPPHW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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