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Report for CCDS41691.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41691.1 Public Homo sapiens 11 RNF169 24 110 108 CCDS HistoryNCBI Gene:254225Re-query CCDS DB by CCDS ID:41691.1Re-query CCDS DB by GeneID:254225See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41691.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299563.5 ENSP00000299563.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000299563.5Link to Ensembl Protein Viewer:ENSP00000299563.4Re-query CCDS DB by Nucleotide ID:ENST00000299563Re-query CCDS DB by Protein ID:ENSP00000299563
Original member Current member NCBI NM_001098638.2 NP_001092108.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098638.2Link to Protein Sequence:NP_001092108.1Re-query CCDS DB by Nucleotide ID:NM_001098638Re-query CCDS DB by Protein ID:NP_001092108Link to BLAST:NP_001092108.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092108.1 708 Q8NCN4 708 100% 0 0

Chromosomal Locations for CCDS 41691.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 74748881 74749382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74789626 74789699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74810184 74810330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74817596 74817714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74834676 74834775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74835546 74836730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2127 nt):
ATGGCGGCTGCAGGTCCGAGTACTCGGGCCTCTTCCGCGGCGGCAGCAGCCGCTCTGAGTCGGCGGGGCC
GGCGGGGCCGCTGTGACGAGACGGCGGCAGCTAAGACTGGGGCCCCAGGCCCGGCTTCTGGACCTTCGCT
GTTGGTGTTGTCGCCGCCGTTGCTGCAGCCGCCGCTGCCGCCGCGGCCGGAGGAATCGGGCTGCGCCGGG
TGCCTGGAGCCCCCCGGAGAAGCAGCGGCCCTGCCGTGCGGCCACTCGCTTTGCCGAGGCTGCGCCCAAC
GCGCCGCCGACGCGGCGGGCCCGGGTTGCCCTCGCTGCCGCGCCCGCGGCCCAGGCTGGGCCCGCCGTCG
GGCCCGCGACGACGGCCAGGCCGACTCAGAGGTGCTGGGCGAGTGCGCCCGCCGCAGCCAACCCGAGCGC
TGCCGCCCGCGCCGGGACGGGGGCGCGGCTGCCGCGGGGCCCAGGCCAGAGCAGGAGCCGCGTGCCGCGC
CTGCGGAGCCAGACTTTATATTCAGAGCACCAATCAAATTAAGCAAGCCTGGGGAACTTCGTGAGGAATA
TGAAAGCTTGAGAAAGCTGAGAGAAGAAAAGTTACAAGAGGAAAAACCCTCTGAAGATCAAATCCACAAG
CTGTTACCAGAGGATACAGAAACAGGGAAAAGGAAAATGGATGAACAGAAAAAAAGAGATGAACCATTAG
TACTGAAAACAAATCTGGAACGTTGTCCTGCACGTCTCTCAGATTCAGAGAATGAAGAACCTTCTCGAGG
CCAGATGACACAGACACATCGCTCGGCATTTGTTTCCAAGAACAACTCCTACTCCTTAGCTTTCCTGGCA
GGGAAGCTAAACTCCAAGGTGGAAAGGAGTCAGAGCTGTAGTGACACAGCCCAGGAAAGAGCGAAGAGCA
GAGTCAGAGCAGTTCCAGGCAACAAAGCCAAGGTCACAACTATGACTCCAGCCTCCAACCCCATCATTGG
TGTCCTCTTGTCAACTCAAAACAACCGCTGCGTCTCGGCCCCTGACTTAACCATCGAAAAGCGTCTACCC
TTCAGCTCCCTTTCATCCTTGGCTTCCCTGCATAAGCCAGAGCGTTCTGTCAGCCCTGAGAGCAATGACA
GCATCTCCGAAGAACTAAACCATTTCAAGCCCATTGTCTGCTCACCATGTACTCCTCCCAAGAGACTCCC
TGATGGCCGTGTGCTAAGTCCTCTCATCATCAAATCAACTCCACGCAACCTAAACAGAAGCCTGCAGAAG
CAGACTTCTTATGAGGCCAGTCCACGGATCCTCAAAAAGTGGGAACAGATCTTTCAGGAGCGGCAGATCA
AAAAGACCCTTTCAAAAGCCACTCTTACCTCTCTGGCTCCTGAAATGGGGGAAGAGTTACTAGGCTCTGA
AGGTATCCATTCTAGCAAGGAGAAGCCACTTGTGGCTGTAAATACAAGATTATCTGGTGGGCAGGTCCTC
TCTGAGTATACTGGACCCACCTCTGCTGATCTTGATCATTTCCCCTCTGTTAGCCAAACAAAAGCAGAAC
AGGACAGTGATAATAAAAGTAGCACTGAGATCCCACTGGAAACCTGCTGTTCCTCAGAACTCAAAGGGGG
AGGCAGTGGGACTTCTTTGGAGAGGGAGCAGTTTGAGGGGTTAGGGTCAACTCCAGATGCCAAGTTAGAC
AAAACCTGTATAAGCAGAGCCATGAAAATCACCACAGTTAATTCAGTGCTACCCCAAAACAGTGTTTTGG
GTGGAGTCCTCAAAACAAAGCAACAATTGAAGACATTAAATCATTTTGATCTGACTAATGGTGTTCTAGT
TGAGAGCCTAAGTGAAGAGCCACTTCCTTCTTTGCGTCGAGGCCGGAAAAGACACTGCAAGACCAAGCAC
TTAGAACAAAATGGCTCCCTTAAAAAACTGCGACAAACCAGTGGGGAGGTGGGTCTGGCCCCAACAGACC
CAGTCCTGCGAGAGATGGAGCAGAAGCTTCAGCAAGAGGAAGAAGACCGACAGTTGGCTCTGCAGTTGCA
GCGCATGTTCGACAATGAGAGGCGGACTGTGAGCCGGCGAAAAGGAAGTGTGGATCAGTATCTCCTACGG
TCCAGCAACATGGCCGGGGCCAAGTAG

Translation (708 aa):
MAAAGPSTRASSAAAAAALSRRGRRGRCDETAAAKTGAPGPASGPSLLVLSPPLLQPPLPPRPEESGCAG
CLEPPGEAAALPCGHSLCRGCAQRAADAAGPGCPRCRARGPGWARRRARDDGQADSEVLGECARRSQPER
CRPRRDGGAAAAGPRPEQEPRAAPAEPDFIFRAPIKLSKPGELREEYESLRKLREEKLQEEKPSEDQIHK
LLPEDTETGKRKMDEQKKRDEPLVLKTNLERCPARLSDSENEEPSRGQMTQTHRSAFVSKNNSYSLAFLA
GKLNSKVERSQSCSDTAQERAKSRVRAVPGNKAKVTTMTPASNPIIGVLLSTQNNRCVSAPDLTIEKRLP
FSSLSSLASLHKPERSVSPESNDSISEELNHFKPIVCSPCTPPKRLPDGRVLSPLIIKSTPRNLNRSLQK
QTSYEASPRILKKWEQIFQERQIKKTLSKATLTSLAPEMGEELLGSEGIHSSKEKPLVAVNTRLSGGQVL
SEYTGPTSADLDHFPSVSQTKAEQDSDNKSSTEIPLETCCSSELKGGGSGTSLEREQFEGLGSTPDAKLD
KTCISRAMKITTVNSVLPQNSVLGGVLKTKQQLKTLNHFDLTNGVLVESLSEEPLPSLRRGRKRHCKTKH
LEQNGSLKKLRQTSGEVGLAPTDPVLREMEQKLQQEEEDRQLALQLQRMFDNERRTVSRRKGSVDQYLLR
SSNMAGAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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