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Report for CCDS41728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41728.1 Public Homo sapiens 11 BSX 24 110 108 CCDS HistoryNCBI Gene:390259Re-query CCDS DB by CCDS ID:41728.1Re-query CCDS DB by GeneID:390259See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41728.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343035.3 ENSP00000344285.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000343035.3Link to Ensembl Protein Viewer:ENSP00000344285.2Re-query CCDS DB by Nucleotide ID:ENST00000343035Re-query CCDS DB by Protein ID:ENSP00000344285
Original member Current member NCBI NM_001098169.2 NP_001091639.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098169.2Link to Protein Sequence:NP_001091639.1Re-query CCDS DB by Nucleotide ID:NM_001098169Re-query CCDS DB by Protein ID:NP_001091639Link to BLAST:NP_001091639.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091639.1 233 Q3C1V8 233 100% 0 0

Chromosomal Locations for CCDS 41728.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 122977649 122977891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122979261 122979457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122981410 122981671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGAATCTCAACTTCACCTCTCCTCTACACCCGGCGTCTTCTCAGAGGCCCACATCCTTCTTCATCGAGG
ACATCCTGCTGCACAAGCCCAAGCCGCTGAGAGAGGTGGCCCCAGACCATTTCGCCAGCTCTCTGGCCTC
TCGGGTGCCTCTGCTAGACTATGGCTACCCCCTCATGCCCACACCCACCCTCTTGGCTCCTCACGCCCAT
CACCCTCTGCATAAGGGAGACCACCATCATCCTTATTTCCTCACCACCTCGGGGATGCCAGTCCCAGCGC
TGTTCCCGCACCCGCAGCACGCGGAGCTGCCGGGGAAGCACTGCCGCCGCCGCAAAGCCCGCACGGTTTT
CTCTGACTCGCAGCTCTCGGGCTTGGAGAAGAGGTTCGAGATCCAGCGCTACCTGTCCACGCCAGAACGA
GTGGAGCTGGCCACGGCCCTCAGCCTGTCCGAGACGCAGGTGAAAACGTGGTTCCAGAACCGGCGGATGA
AGCATAAAAAGCAACTGCGGAAAAGCCAAGACGAACCCAAAGCACCAGACGGGCCAGAAAGCCCCGAGGG
CAGCCCCCGCGGTTCAGAGGCCGCCACCGCCGCCGAGGCTCGGCTGAGCCTGCCCGCCGGTCCCTTCGTG
CTGACCGAGCCAGAGGACGAGGTGGACATTGGAGACGAGGGGGAGCTGGGCTCAGGGCCGCACGTGCTCT
GA

Translation (233 aa):
MNLNFTSPLHPASSQRPTSFFIEDILLHKPKPLREVAPDHFASSLASRVPLLDYGYPLMPTPTLLAPHAH
HPLHKGDHHHPYFLTTSGMPVPALFPHPQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPER
VELATALSLSETQVKTWFQNRRMKHKKQLRKSQDEPKAPDGPESPEGSPRGSEAATAAEARLSLPAGPFV
LTEPEDEVDIGDEGELGSGPHVL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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