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Report for CCDS41741.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41741.1 Public Homo sapiens 12 IFFO1 24 110 108 CCDS HistoryNCBI Gene:25900Re-query CCDS DB by CCDS ID:41741.1Re-query CCDS DB by GeneID:25900See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41741.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356896.8 ENSP00000349364.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356896.8Link to Ensembl Protein Viewer:ENSP00000349364.4Re-query CCDS DB by Nucleotide ID:ENST00000356896Re-query CCDS DB by Protein ID:ENSP00000349364
Original member Current member NCBI NM_001039670.3 NP_001034759.1 Accepted alive Link to Nucleotide Sequence:NM_001039670.3Link to Protein Sequence:NP_001034759.1Re-query CCDS DB by Nucleotide ID:NM_001039670Re-query CCDS DB by Protein ID:NP_001034759Link to BLAST:NP_001034759.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034759.1 563 Q0D2I5-5 563 100% 0 0

Chromosomal Locations for CCDS 41741.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 6540483 6540588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6541512 6541642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6548065 6548160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6548425 6548545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6548668 6548825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6549476 6549484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6549756 6549896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6550695 6550790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6550941 6551001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6555257 6556029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1692 nt):
ATGAATCCGTTATTCGGCCCCAACCTCTTCCTCCTGCAGCAGGAGCAGCAGGGCCTGGCCGGGCCACTGG
GGGACTCACTGGGAGGCGACCACTTCGCCGGGGGAGGAGACTTGCCCCCGGCGCCTCTCTCGCCGGCCGG
CCCTGCTGCCTACTCGCCGCCCGGGCCGGGCCCGGCCCCGCCTGCCGCCATGGCCCTCCGCAATGACCTG
GGCTCCAACATCAACGTGCTCAAGACCCTGAACCTCCGGTTCCGCTGCTTCCTGGCCAAGGTGCATGAGC
TGGAGCGCCGGAACCGGCTGTTGGAGAAGCAACTGCAGCAAGCGCTGGAGGAGGGTAAGCAGGGCCGGCG
GGGCCTGGGTCGTCGCGACCAGGCAGTGCAGACCGGCTTCGTCAGCCCCATCCGGCCCCTGGGGCTGCAG
CTGGGCGCCCGGCCGGCCGCTGTCTGCAGCCCTTCGGCGCGCGTGCTGGGCTCGCCCGCGCGCTCCCCGG
CCGGCCCCCTCGCGCCCTCCGCGGCCAGCCTCTCGTCGTCCTCCACCTCCACCTCCACCACCTATTCCTC
GTCGGCCCGCTTCATGCCCGGCACCATCTGGTCGTTCTCGCACGCCCGCCGGCTCGGGCCGGGACTGGAG
CCCACTCTGGTGCAAGGGCCTGGCTTGTCGTGGGTGCACCCGGATGGGGTGGGCGTCCAGATCGACACCA
TCACGCCCGAGATCCGCGCTCTCTACAACGTGCTGGCCAAAGTGAAGCGGGAGCGGGACGAGTACAAGCG
GAGGTGGGAAGAGGAGTACACGGTGCGGATCCAGCTGCAAGACCGTGTAAATGAGCTCCAGGAGGAAGCC
CAGGAGGCTGATGCCTGCCAGGAGGAGCTGGCACTGAAGGTGGAACAGTTGAAGGCTGAGCTGGTGGTCT
TCAAGGGGCTCATGAGTAACAACCTGTCGGAGCTGGACACCAAGATCCAGGAGAAAGCCATGAAGGTGGA
TATGGACATCTGCCGCCGCATCGACATCACCGCCAAGCTCTGCGATGTGGCTCAGCAGCGCAACTGCGAG
GACATGATCCAGATGTTCCAGAAGAAGCTGGTCCCATCCATGGGGGGGCGGAAGCGGGAGCGCAAGGCTG
CCGTCGAGGAGGACACCTCCCTGTCGGAGAGTGAGGGGCCCCGCCAGCCCGATGGGGATGAGGAGGAGAG
CACAGCCCTCAGCATCAACGAGGAGATGCAGCGCATGCTCAACCAGCTGAGGGAGTATGATTTTGAGGAC
GACTGTGACAGCCTGACTTGGGAGGAGACTGAGGAGACCCTGCTGCTTTGGGAGGATTTCTCAGGCTATG
CCATGGCAGCTGCAGAGGCCCAGGGAGAGCAGCAGGAAGATAGCCTGGAGAAGGTGATTAAAGATACGGA
GTCCCTGTTCAAAACCCGGGAGAAGGAGTATCAGGAGACCATTGACCAGATAGAGCTGGAGTTGGCCACG
GCCAAGAACGACATGAACCGGCACCTGCACGAGTACATGGAGATGTGCAGCATGAAGCGCGGCCTGGACG
TGCAGATGGAGACCTGCCGCCGGCTCATCACCCAGTCTGGAGACCGAAAGTCTCCTGCTTTCACTGCGGT
CCCGCTTAGCGACCCGCCGCCGCCGCCAAGCGAGGCTGAGGACTCCGATCGCGATGTCTCATCTGACAGC
TCCATGAGATAG

Translation (563 aa):
MNPLFGPNLFLLQQEQQGLAGPLGDSLGGDHFAGGGDLPPAPLSPAGPAAYSPPGPGPAPPAAMALRNDL
GSNINVLKTLNLRFRCFLAKVHELERRNRLLEKQLQQALEEGKQGRRGLGRRDQAVQTGFVSPIRPLGLQ
LGARPAAVCSPSARVLGSPARSPAGPLAPSAASLSSSSTSTSTTYSSSARFMPGTIWSFSHARRLGPGLE
PTLVQGPGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRWEEEYTVRIQLQDRVNELQEEA
QEADACQEELALKVEQLKAELVVFKGLMSNNLSELDTKIQEKAMKVDMDICRRIDITAKLCDVAQQRNCE
DMIQMFQKKLVPSMGGRKRERKAAVEEDTSLSESEGPRQPDGDEEESTALSINEEMQRMLNQLREYDFED
DCDSLTWEETEETLLLWEDFSGYAMAAAEAQGEQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELAT
AKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPPPSEAEDSDRDVSSDS
SMR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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