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Report for CCDS41774.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41774.1 Public Homo sapiens 12 SLC38A1 24 110 108 CCDS HistoryNCBI Gene:81539Re-query CCDS DB by CCDS ID:41774.1Re-query CCDS DB by GeneID:81539See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41774.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398637.10 ENSP00000381634.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398637.10Link to Ensembl Protein Viewer:ENSP00000381634.4Re-query CCDS DB by Nucleotide ID:ENST00000398637Re-query CCDS DB by Protein ID:ENSP00000381634
Original member Current member EBI ENST00000439706.5 ENSP00000398142.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000439706.5Link to Ensembl Protein Viewer:ENSP00000398142.1Re-query CCDS DB by Nucleotide ID:ENST00000439706Re-query CCDS DB by Protein ID:ENSP00000398142
Original member Current member EBI ENST00000546893.5 ENSP00000447853.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000546893.5Link to Ensembl Protein Viewer:ENSP00000447853.1Re-query CCDS DB by Nucleotide ID:ENST00000546893Re-query CCDS DB by Protein ID:ENSP00000447853
Original member Current member EBI ENST00000549049.5 ENSP00000449607.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000549049.5Link to Ensembl Protein Viewer:ENSP00000449607.1Re-query CCDS DB by Nucleotide ID:ENST00000549049Re-query CCDS DB by Protein ID:ENSP00000449607
Original member Current member NCBI NM_001077484.2 NP_001070952.1 Accepted alive Link to Nucleotide Sequence:NM_001077484.2Link to Protein Sequence:NP_001070952.1Re-query CCDS DB by Nucleotide ID:NM_001077484Re-query CCDS DB by Protein ID:NP_001070952Link to BLAST:NP_001070952.1
Original member Current member NCBI NM_001278387.2 NP_001265316.1 Accepted alive Link to Nucleotide Sequence:NM_001278387.2Link to Protein Sequence:NP_001265316.1Re-query CCDS DB by Nucleotide ID:NM_001278387Re-query CCDS DB by Protein ID:NP_001265316Link to BLAST:NP_001265316.1
Original member Current member NCBI NM_001278388.2 NP_001265317.1 Accepted alive Link to Nucleotide Sequence:NM_001278388.2Link to Protein Sequence:NP_001265317.1Re-query CCDS DB by Nucleotide ID:NM_001278388Re-query CCDS DB by Protein ID:NP_001265317Link to BLAST:NP_001265317.1
Original member Current member NCBI NM_001278389.2 NP_001265318.1 Accepted alive Link to Nucleotide Sequence:NM_001278389.2Link to Protein Sequence:NP_001265318.1Re-query CCDS DB by Nucleotide ID:NM_001278389Re-query CCDS DB by Protein ID:NP_001265318Link to BLAST:NP_001265318.1
Original member Current member NCBI NM_030674.4 NP_109599.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030674.4Link to Protein Sequence:NP_109599.3Re-query CCDS DB by Nucleotide ID:NM_030674Re-query CCDS DB by Protein ID:NP_109599Link to BLAST:NP_109599.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070952.1 487 Q9H2H9 487 100% 0 0
NP_001265316.1 487 Q9H2H9 487 100% 0 0
NP_001265317.1 487 Q9H2H9 487 100% 0 0
NP_001265318.1 487 Q9H2H9 487 100% 0 0
NP_109599.3 487 Q9H2H9 487 100% 0 0

Chromosomal Locations for CCDS 41774.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 46188970 46189071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46197720 46197817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46197919 46198060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46198625 46198743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46201098 46201198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46203010 46203089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46204301 46204417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46204532 46204590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46206080 46206162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46207155 46207236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46207529 46207621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46209054 46209127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46229153 46229268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46229564 46229639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46239679 46239800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGATGCATTTCAAAAGTGGACTCGAATTAACTGAGTTGCAAAACATGACAGTGCCCGAGGATGATAACA
TTAGCAATGACTCCAATGATTTCACCGAAGTAGAAAATGGTCAGATAAATAGCAAGTTTATTTCTGATCG
TGAAAGTAGAAGAAGTCTCACAAACAGCCATTTGGAAAAAAAGAAGTGTGATGAGTATATTCCAGGTACA
ACCTCCTTAGGCATGTCTGTTTTTAACCTAAGCAACGCCATTATGGGCAGTGGGATTTTGGGACTCGCCT
TTGCCCTGGCAAACACTGGAATCCTACTTTTTCTGGTACTTTTGACTTCAGTGACATTGCTGTCTATATA
TTCAATAAACCTCCTATTGATCTGTTCAAAAGAAACAGGCTGCATGGTGTATGAAAAGCTGGGGGAACAA
GTCTTTGGCACCACAGGGAAGTTCGTAATCTTTGGAGCCACCTCTCTACAGAACACTGGAGCAATGCTGA
GCTACCTCTTCATCGTAAAAAATGAACTACCCTCTGCCATAAAGTTTCTAATGGGAAAGGAAGAGACATT
TTCAGCCTGGTACGTGGATGGCCGCGTTCTGGTGGTGATAGTTACCTTTGGCATAATTCTCCCTCTGTGT
CTCTTGAAGAACTTAGGGTATCTTGGCTATACTAGTGGATTTTCCTTGAGCTGTATGGTTTTTTTCCTAA
TTGTGGTTATTTACAAGAAATTTCAAATTCCCTGCATTGTTCCAGAGCTAAATTCAACAATAAGTGCTAA
TTCAACAAATGCTGACACGTGTACGCCAAAATATGTTACCTTCAATTCAAAGACCGTGTATGCTTTACCC
ACCATTGCATTTGCATTTGTTTGCCACCCGTCAGTCCTGCCAATTTACAGTGAGCTTAAAGACCGATCAC
AGAAAAAAATGCAGATGGTTTCAAACATCTCCTTTTTCGCCATGTTTGTTATGTACTTCTTGACTGCCAT
TTTTGGCTACTTGACATTCTATGACAACGTGCAGTCCGACCTCCTTCACAAATATCAGAGTAAAGATGAC
ATTCTCATCCTGACAGTGCGGCTGGCTGTCATTGTTGCTGTGATCCTCACAGTGCCGGTGTTATTTTTCA
CGGTTCGTTCATCTTTATTTGAACTGGCTAAGAAAACAAAGTTTAATTTATGTCGTCATACCGTGGTTAC
CTGCATACTCTTGGTTGTTATCAACTTGTTGGTGATCTTCATACCCTCCATGAAGGATATTTTTGGAGTC
GTAGGAGTTACATCTGCTAACATGCTTATTTTCATTCTTCCTTCATCTCTTTATTTAAAAATCACAGACC
AGGATGGAGATAAAGGAACTCAAAGAATTTGGGCTGCCCTTTTCTTGGGCCTGGGGGTGTTGTTCTCCTT
GGTCAGCATTCCCTTGGTCATCTATGACTGGGCCTGCTCATCGAGTAGTGACGAAGGCCACTGA

Translation (487 aa):
MMHFKSGLELTELQNMTVPEDDNISNDSNDFTEVENGQINSKFISDRESRRSLTNSHLEKKKCDEYIPGT
TSLGMSVFNLSNAIMGSGILGLAFALANTGILLFLVLLTSVTLLSIYSINLLLICSKETGCMVYEKLGEQ
VFGTTGKFVIFGATSLQNTGAMLSYLFIVKNELPSAIKFLMGKEETFSAWYVDGRVLVVIVTFGIILPLC
LLKNLGYLGYTSGFSLSCMVFFLIVVIYKKFQIPCIVPELNSTISANSTNADTCTPKYVTFNSKTVYALP
TIAFAFVCHPSVLPIYSELKDRSQKKMQMVSNISFFAMFVMYFLTAIFGYLTFYDNVQSDLLHKYQSKDD
ILILTVRLAVIVAVILTVPVLFFTVRSSLFELAKKTKFNLCRHTVVTCILLVVINLLVIFIPSMKDIFGV
VGVTSANMLIFILPSSLYLKITDQDGDKGTQRIWAALFLGLGVLFSLVSIPLVIYDWACSSSSDEGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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