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Report for CCDS41784.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41784.1 Public Homo sapiens 12 KRT80 24 110 108 CCDS HistoryNCBI Gene:144501Re-query CCDS DB by CCDS ID:41784.1Re-query CCDS DB by GeneID:144501See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41784.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000313234.9 ENSP00000369361.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000313234.9Link to Ensembl Protein Viewer:ENSP00000369361.2Re-query CCDS DB by Nucleotide ID:ENST00000313234Re-query CCDS DB by Protein ID:ENSP00000369361
Original member Current member NCBI NM_001081492.2 NP_001074961.1 Accepted alive Link to Nucleotide Sequence:NM_001081492.2Link to Protein Sequence:NP_001074961.1Re-query CCDS DB by Nucleotide ID:NM_001081492Re-query CCDS DB by Protein ID:NP_001074961Link to BLAST:NP_001074961.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074961.1 422 Q6KB66-2 422 100% 0 0

Chromosomal Locations for CCDS 41784.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 52171523 52171557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52171658 52171713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52172198 52172418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52173038 52173163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52173600 52173764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52180513 52180608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52180903 52180963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52185379 52185587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52191603 52191902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGGCCTGCCGCTCCTGCGTGGTTGGCTTCAGCAGCCTCAGCAGCTGTGAGGTGACCCCGGTGGGCAGCC
CCCGGCCTGGAACCTCAGGATGGGACAGCTGCAGGGCCCCCGGGCCGGGCTTCAGCTCCCGCAGCCTCAC
AGGCTGCTGGTCGGCTGGCACTATCTCCAAGGTGACTGTGAACCCCGGCCTGCTGGTGCCCCTGGATGTC
AAGTTGGACCCCGCTGTTCAGCAGCTGAAGAACCAGGAGAAGGAGGAGATGAAGGCCCTCAATGATAAAT
TTGCCTCCCTAATTGGCAAGGTGCAAGCCCTGGAACAGCGCAACCAGCTGCTGGAGACACGCTGGAGCTT
CCTGCAGGGCCAGGACTCAGCCATCTTCGACCTCGGGCATCTCTATGAGGAATATCAGGGCCGGCTGCAG
GAGGAACTGCGCAAAGTGAGCCAGGAGCGGGGGCAGCTGGAGGCCAACCTGCTGCAGGTGCTGGAGAAGG
TTGAGGAGTTTCGAATCAGGTATGAGGATGAGATCTCCAAGCGCACAGACATGGAGTTCACCTTTGTTCA
GCTGAAGAAGGACCTGGATGCAGAGTGTCTTCATCGGACTGAACTGGAAACCAAGTTAAAAAGCCTGGAG
AGCTTCGTGGAGTTGATGAAAACCATCTATGAGCAGGAGCTGAAGGACCTGGCAGCACAGGTGAAGGATG
TGTCGGTGACCGTCGGCATGGACAGCCGCTGCCACATCGACCTGAGCGGCATCGTGGAGGAGGTGAAGGC
CCAGTATGACGCCGTCGCGGCTCGCAGCCTGGAGGAGGCCGAGGCATACTCTCGGAGCCAGCTGGAGGAG
CAGGCCGCCCGCTCGGCCGAGTATGGGAGCAGCCTCCAGAGCAGCCGCAGCGAGATCGCGGATCTCAATG
TGCGCATCCAGAAGCTGCGGTCCCAGATCCTCTCTGTCAAGAGCCATTGCCTGAAACTGGAGGAGAACAT
CAAGACAGCTGAGGAGCAGGGTGAGCTGGCCTTCCAGGATGCCAAGACCAAGCTGGCCCAGCTGGAGGCC
GCCCTGCAGCAGGCCAAGCAGGACATGGCGCGGCAGCTGCGCAAGTACCAGGAGCTGATGAACGTCAAGC
TGGCCCTGGACATCGAGATCGCCACCTACAGGAAGCTGGTGGAGGGCGAGGAGGGCAGGATGGACTCGCC
CTCAGCCACTGTGGTCAGCGCTGTGCAGTCCAGGTGCAAAACCGCCCCTTCCCTCCCCTACCCCTTATGT
TCCCTGTAG

Translation (422 aa):
MACRSCVVGFSSLSSCEVTPVGSPRPGTSGWDSCRAPGPGFSSRSLTGCWSAGTISKVTVNPGLLVPLDV
KLDPAVQQLKNQEKEEMKALNDKFASLIGKVQALEQRNQLLETRWSFLQGQDSAIFDLGHLYEEYQGRLQ
EELRKVSQERGQLEANLLQVLEKVEEFRIRYEDEISKRTDMEFTFVQLKKDLDAECLHRTELETKLKSLE
SFVELMKTIYEQELKDLAAQVKDVSVTVGMDSRCHIDLSGIVEEVKAQYDAVAARSLEEAEAYSRSQLEE
QAARSAEYGSSLQSSRSEIADLNVRIQKLRSQILSVKSHCLKLEENIKTAEEQGELAFQDAKTKLAQLEA
ALQQAKQDMARQLRKYQELMNVKLALDIEIATYRKLVEGEEGRMDSPSATVVSAVQSRCKTAPSLPYPLC
SL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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