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Report for CCDS41890.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41890.1 Public Homo sapiens 13 INTS6 24 110 108 CCDS HistoryNCBI Gene:26512Re-query CCDS DB by CCDS ID:41890.1Re-query CCDS DB by GeneID:26512See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41890.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398119.6 ENSP00000381187.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398119.6Link to Ensembl Protein Viewer:ENSP00000381187.2Re-query CCDS DB by Nucleotide ID:ENST00000398119Re-query CCDS DB by Protein ID:ENSP00000381187
Original member Current member NCBI NM_001039937.2 NP_001035026.1 Accepted alive Link to Nucleotide Sequence:NM_001039937.2Link to Protein Sequence:NP_001035026.1Re-query CCDS DB by Nucleotide ID:NM_001039937Re-query CCDS DB by Protein ID:NP_001035026Link to BLAST:NP_001035026.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035026.1 874 Q9UL03-3 874 100% 0 0

Chromosomal Locations for CCDS 41890.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 51365752 51365845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51367805 51367898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51368939 51369310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51374208 51374439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51374654 51374796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51376048 51376174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51378239 51378454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51379462 51379572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51382029 51382123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51383329 51383461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51383589 51383741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51387386 51387540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51389319 51389444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51395300 51395483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51430294 51430383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51451025 51451174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51451978 51452055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51452415 51452486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2625 nt):
ATGAACCAGCGCAGCCATCTGGGCACCACCTACCTGGACACGGCCAAAGGCGCGGTAGAGACCTTCATGA
AGCTCCGTGCCCGGGACCCTGCCAGCAGAGGAGACAGGTATATGCTGGTCACTTTCGAAGAGCCGCCCTA
TGCTATCAAGGCTGGATGGAAAGAAAACCATGCAACGTTTATGAATGAATTGAAAAACCTTCAGGCTGAA
GGACTTACGACTCTTGGCCAATCCCTAAGGACAGCTTTTGATTTATTAAATTTAAATAGATTAGTAACTG
GCATAGACAACTATGGGCAGGGAAGAAACCCTTTTTTCTTGGAGCCAGCAATAATTATCACAATTACTGA
TGGGAGCAAGTTGACTACCACCAGTGGAGTCCAGGATGAGCTTCATTTACCTCTTAATTCTCCTTTGCCT
GGAAGTGAATTGACCAAGGAACCTTTTCGTTGGGATCAGAGACTCTTTGCATTAGTGTTGCGGTTGCCTG
GCACCATGTCAGTAGAATCAGAACAGTTGACAGGTGTGCCTTTAGATGACTCTGCAATCACACCAATGTG
TGAAGTGACAGGCGGCCGTTCATATTCTGTGTGTTCTCCAAGAATGCTTAATCAGTGTCTGGAGTCCTTG
GTGCAGAAAGTACAAAGTGGGGTGGTAATAAACTTTGAAAAAGCAGGACCAGATCCTTCCCCTGTAGAAG
ATGGGCAGCCAGATATATCAAGGCCTTTTGGATCTCAGCCTTGGCATAGCTGTCACAAACTCATATATGT
CAGACCAAATCCTAAAACTGGGGTTCCTATAGGTCATTGGCCTGTTCCAGAGTCTTTTTGGCCAGATCAA
AATTCGCCAACACTACCACCTCGTACATCTCATCCTGTAGTGAAGTTTTCCTGTACAGACTGTGAACCAA
TGGTTATTGATAAACTTCCTTTTGACAAATATGAGTTGGAACCTTCACCACTGACTCAATTTATCCTGGA
AAGGAAATCTCCTCAAACATGTTGGCAGGTGTACGTGAGCAATAGTGCAAAATACAGTGAACTTGGTCAT
CCTTTTGGTTACTTGAAAGCCAGTACAGCACTGAACTGTGTCAACTTATTTGTGATGCCTTACAATTATC
CAGTCCTTCTTCCCCTCTTAGATGACTTGTTTAAAGTGCATAAAGCAAAACCAACATTGAAGTGGAGACA
GTCATTTGAAAGTTATTTGAAGACAATGCCTCCCTACTATCTTGGGCCCTTGAAGAAAGCTGTTAGGATG
ATGGGAGCACCTAACCTAATAGCAGACAGTATGGAATATGGACTTAGTTACAGTGTCATTTCATACCTCA
AAAAACTGAGTCAACAGGCCAAAATAGAATCTGATCGAGTCATTGGATCTGTAGGCAAAAAAGTAGTACA
GGAGACTGGAATAAAAGTCCGGAGCCGATCACATGGTTTATCAATGGCATATAGGAAAGATTTTCAACAA
CTCCTCCAGGGAATTTCAGAGGATGTCCCTCACAGACTGCTAGACCTTAATATGAAGGAATACACTGGGT
TCCAAGTTGCTTTGCTGAATAAGGATTTGAAGCCACAGACATTTAGAAATGCTTATGACATACCAAGACG
AAATCTTTTGGATCACTTAACAAGAATGAGATCTAATCTTTTGAAGAGCACTCGCAGATTTCTGAAAGGA
CAGGACGAAGATCAAGTGCACAGTGTTCCTATAGCACAAATGGGGAACTACCAGGAATACCTCAAGCAAG
TACCTTCTCCACTAAGAGAACTTGATCCTGATCAGCCACGAAGGTTGCATACATTTGGCAACCCCTTTAA
GCTGGATAAGAAGGGTATGATGATAGATGAAGCAGATGAATTTGTGGCTGGACCTCAAAATAAACATAAA
CGACCCGGAGAACCAAATATGCAAGGGATCCCTAAAAGACGTCGGTGTATGTCTCCACTACTAAGAGGCA
GACAGCAGAATCCTGTTGTAAACAATCATATTGGGGGAAAAGGACCACCTGCACCTACAACTCAAGCACA
GCCAGATCTTATTAAACCTCTTCCTCTTCATAAAATTTCAGAAACCACTAATGATTCGATAATACATGAT
GTGGTTGAAAATCATGTTGCAGACCAACTTTCATCAGACATTACACCAAATGCTATGGATACGGAATTTT
CAGCATCTTCTCCAGCCAGTTTACTGGAACGGCCAACCAATCATATGGAGGCTCTTGGTCATGACCATTT
AGGAACCAATGACCTCACTGTTGGTGGATTTTTAGAAAATCATGAGGAGCCAAGAGATAAAGAACAATGT
GCTGAAGAGAACATACCAGCATCTTCACTCAACAAAGGAAAGAAATTGATGCATTGCAGAAGCCATGAAG
AGGTCAATACTGAACTAAAAGCACAAATAATGAAAGAGATCCGAAAGCCAGGAAGAAAATATGAAAGAAT
CTTCACTTTACTGAAGCATGTGCAAGGCAGTTTACAAACAAGACTAATATTTTTACAAAATGTCATTAAA
GAAGCATCAAGGTTTAAAAAACGAATGCTAATAGAACAACTGGAGAACTTCTTGGATGAAATTCATCGAA
GAGCCAATCAGATCAACCATATTAATAGCAATTAA

Translation (874 aa):
MNQRSHLGTTYLDTAKGAVETFMKLRARDPASRGDRYMLVTFEEPPYAIKAGWKENHATFMNELKNLQAE
GLTTLGQSLRTAFDLLNLNRLVTGIDNYGQGRNPFFLEPAIIITITDGSKLTTTSGVQDELHLPLNSPLP
GSELTKEPFRWDQRLFALVLRLPGTMSVESEQLTGVPLDDSAITPMCEVTGGRSYSVCSPRMLNQCLESL
VQKVQSGVVINFEKAGPDPSPVEDGQPDISRPFGSQPWHSCHKLIYVRPNPKTGVPIGHWPVPESFWPDQ
NSPTLPPRTSHPVVKFSCTDCEPMVIDKLPFDKYELEPSPLTQFILERKSPQTCWQVYVSNSAKYSELGH
PFGYLKASTALNCVNLFVMPYNYPVLLPLLDDLFKVHKAKPTLKWRQSFESYLKTMPPYYLGPLKKAVRM
MGAPNLIADSMEYGLSYSVISYLKKLSQQAKIESDRVIGSVGKKVVQETGIKVRSRSHGLSMAYRKDFQQ
LLQGISEDVPHRLLDLNMKEYTGFQVALLNKDLKPQTFRNAYDIPRRNLLDHLTRMRSNLLKSTRRFLKG
QDEDQVHSVPIAQMGNYQEYLKQVPSPLRELDPDQPRRLHTFGNPFKLDKKGMMIDEADEFVAGPQNKHK
RPGEPNMQGIPKRRRCMSPLLRGRQQNPVVNNHIGGKGPPAPTTQAQPDLIKPLPLHKISETTNDSIIHD
VVENHVADQLSSDITPNAMDTEFSASSPASLLERPTNHMEALGHDHLGTNDLTVGGFLENHEEPRDKEQC
AEENIPASSLNKGKKLMHCRSHEEVNTELKAQIMKEIRKPGRKYERIFTLLKHVQGSLQTRLIFLQNVIK
EASRFKKRMLIEQLENFLDEIHRRANQINHINSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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