NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS421.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
421.1 Public Homo sapiens 1 GNL2 24 110 108 CCDS HistoryNCBI Gene:29889Re-query CCDS DB by CCDS ID:421.1Re-query CCDS DB by GeneID:29889See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 421.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373062.8 ENSP00000362153.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373062.8Link to Ensembl Protein Viewer:ENSP00000362153.3Re-query CCDS DB by Nucleotide ID:ENST00000373062Re-query CCDS DB by Protein ID:ENSP00000362153
Original member Current member NCBI NM_013285.3 NP_037417.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013285.3Link to Protein Sequence:NP_037417.1Re-query CCDS DB by Nucleotide ID:NM_013285Re-query CCDS DB by Protein ID:NP_037417Link to BLAST:NP_037417.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_037417.1 731 Q13823 731 100% 0 0

Chromosomal Locations for CCDS 421.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37566855 37567007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37567673 37567764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37568275 37568357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37568851 37569302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37574343 37574456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37574665 37574823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37575595 37575699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37576428 37576556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37582223 37582336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37582778 37582936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37583867 37583933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37587311 37587495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37590706 37590845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37592712 37592806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37593762 37593846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37595759 37595822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2196 nt):
ATGGTGAAGCCCAAGTACAAAGGACGGAGCACCATCAACCCGTCCAAGGCCAGCACAAACCCAGATCGAG
TGCAGGGAGCAGGAGGCCAAAACATGAGGGACCGGGCCACCATCCGGCGCCTGAATATGTATAGGCAAAA
GGAGCGCAGGAACAGTCGTGGTAAAATAATTAAACCCCTGCAATATCAATCAACGGTGGCTTCTGGCACA
GTGGCAAGAGTAGAGCCAAATATTAAATGGTTTGGAAACACACGTGTGATTAAGCAGTCATCATTACAAA
AATTTCAAGAGGAAATGGATACAGTTATGAAGGATCCATACAAAGTTGTCATGAAGCAAAGCAAGTTACC
AATGTCTCTTCTCCATGATCGAATCCGGCCTCATAACTTGAAGGTGCACATTCTTGATACTGAAAGTTTT
GAAACTACATTTGGCCCTAAGTCACAGAGGAAACGACCAAACTTATTTGCAAGTGATATGCAGTCTCTTA
TCGAAAATGCTGAAATGTCCACTGAGAGCTATGACCAGGGCAAGGATCGTGATTTGGTAACTGAAGACAC
TGGTGTGAGAAATGAAGCTCAAGAAGAGATCTATAAAAAGGGACAGTCCAAAAGAATATGGGGTGAGCTC
TACAAGGTGATAGATTCATCAGATGTTGTAGTTCAAGTTCTTGATGCTAGAGATCCAATGGGTACTCGTT
CCCCTCACATTGAAACTTACCTGAAGAAGGAAAAACCTTGGAAACACCTCATTTTTGTACTTAACAAATG
TGACCTTGTTCCAACCTGGGCAACAAAACGGTGGGTTGCTGTCCTCTCCCAGGATTATCCAACACTTGCT
TTCCATGCAAGCCTTACTAACCCGTTTGGCAAGGGAGCATTCATTCAGCTTCTGCGGCAGTTTGGAAAGT
TGCACACTGACAAGAAACAGATCAGTGTTGGGTTCATTGGCTATCCAAATGTTGGCAAGAGCTCTGTGAT
AAATACATTGCGTTCTAAGAAAGTTTGCAACGTGGCTCCCATTGCAGGTGAAACAAAGGTCTGGCAGTAT
ATTACTTTGATGCGTCGGATATTCCTGATTGACTGTCCAGGTGTGGTTTACCCCTCTGAGGACTCCGAGA
CAGACATTGTGCTAAAAGGAGTTGTTCAAGTAGAAAAAATTAAGAGTCCTGAAGACCACATTGGTGCTGT
ACTTGAACGAGCAAAGCCAGAATATATCAGCAAAACATACAAGATTGATTCTTGGGAGAATGCTGAGGAC
TTTCTTGAGAAGCTCGCTTTCCGGACTGGGAAGTTACTAAAGGGTGGAGAGCCCGACTTGCAGACTGTGG
GTAAGATGGTCCTCAATGACTGGCAGAGGGGCCGGATTCCTTTCTTTGTCAAGCCACCCAATGCAGAGCC
ACTTGTGGCCCCCCAGCTTCTACCCTCCTCATCTTTGGAAGTTGTCCCAGAAGCAGCCCAGAACAATCCA
GGGGAGGAAGTCACAGAAACTGCAGGTGAAGGGTCAGAATCCATCATTAAGGAAGAAACAGAAGAGAACA
GTCACTGTGATGCTAACACAGAGATGCAGCAGATTCTCACACGAGTTCGGCAGAACTTTGGTAAAATCAA
CGTGGTGCCTCAGTTTTCTGGGGATGACCTGGTTCCTGTGGAGGTGTCAGATCTTGAGGAAGAGCTTGAG
AGCTTTTCTGATGAAGAGGAGGAGGAACAGGAGCAACAAAGAGATGATGCGGAAGAGTCTTCCTCGGAGC
CTGAGGAGGAAAATGTGGGAAACGACACCAAAGCCGTTATTAAAGCACTGGATGAGAAGATTGCCAAATA
TCAGAAGTTTCTAGACAAAGCCAAAGCCAAAAAGTTTTCAGCAGTCAGAATATCCAAGGGACTGAGTGAA
AAGATATTTGCAAAACCTGAAGAACAAAGAAAAACACTGGAAGAAGATGTAGATGACAGAGCACCTTCCA
AAAAGGGAAAGAAGCGGAAGGCACAAAGGGAAGAGGAACAGGAACATTCAAATAAAGCTCCCAGGGCGCT
TACATCAAAAGAACGGAGGCGAGCAGTACGACAGCAACGGCCGAAAAAAGTTGGTGTGCGCTACTATGAA
ACACACAACGTGAAAAATAGGAACAGGAACAAAAAGAAGACCAATGACTCAGAGGGACAGAAACACAAAC
GCAAAAAATTCAGACAAAAGCAGTAA

Translation (731 aa):
MVKPKYKGRSTINPSKASTNPDRVQGAGGQNMRDRATIRRLNMYRQKERRNSRGKIIKPLQYQSTVASGT
VARVEPNIKWFGNTRVIKQSSLQKFQEEMDTVMKDPYKVVMKQSKLPMSLLHDRIRPHNLKVHILDTESF
ETTFGPKSQRKRPNLFASDMQSLIENAEMSTESYDQGKDRDLVTEDTGVRNEAQEEIYKKGQSKRIWGEL
YKVIDSSDVVVQVLDARDPMGTRSPHIETYLKKEKPWKHLIFVLNKCDLVPTWATKRWVAVLSQDYPTLA
FHASLTNPFGKGAFIQLLRQFGKLHTDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQY
ITLMRRIFLIDCPGVVYPSEDSETDIVLKGVVQVEKIKSPEDHIGAVLERAKPEYISKTYKIDSWENAED
FLEKLAFRTGKLLKGGEPDLQTVGKMVLNDWQRGRIPFFVKPPNAEPLVAPQLLPSSSLEVVPEAAQNNP
GEEVTETAGEGSESIIKEETEENSHCDANTEMQQILTRVRQNFGKINVVPQFSGDDLVPVEVSDLEEELE
SFSDEEEEEQEQQRDDAEESSSEPEEENVGNDTKAVIKALDEKIAKYQKFLDKAKAKKFSAVRISKGLSE
KIFAKPEEQRKTLEEDVDDRAPSKKGKKRKAQREEEQEHSNKAPRALTSKERRRAVRQQRPKKVGVRYYE
THNVKNRNRNKKKTNDSEGQKHKRKKFRQKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH