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Report for CCDS42128.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42128.1 Public Homo sapiens 16 GP2 24 110 108 CCDS HistoryNCBI Gene:2813Re-query CCDS DB by CCDS ID:42128.1Re-query CCDS DB by GeneID:2813See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42128.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381362.8 ENSP00000370767.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381362.8Link to Ensembl Protein Viewer:ENSP00000370767.4Re-query CCDS DB by Nucleotide ID:ENST00000381362Re-query CCDS DB by Protein ID:ENSP00000370767
Original member Current member NCBI NM_001007240.3 NP_001007241.2 Accepted alive Link to Nucleotide Sequence:NM_001007240.3Link to Protein Sequence:NP_001007241.2Re-query CCDS DB by Nucleotide ID:NM_001007240Re-query CCDS DB by Protein ID:NP_001007241Link to BLAST:NP_001007241.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007241.2 537 P55259-1 537 100% 0 0

Chromosomal Locations for CCDS 42128.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 20311223 20311281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20314657 20314701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20315956 20316040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20317213 20317375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20318185 20318430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20319620 20319768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20320262 20320473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20322869 20322979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20323381 20323389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20323816 20324256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20326338 20326431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1614 nt):
ATGCCTCACCTTATGGAAAGGATGGTGGGCTCTGGCCTCCTGTGGCTGGCCTTGGTCTCCTGCATTCTGA
CCCAGGCATCTGCAGTGCAGCGAGGTTATGGAAACCCCATTGAAGCCAGTTCGTATGGGCTGGACCTGGA
CTGCGGAGCTCCTGGCACCCCAGAGGCTCATGTCTGTTTTGACCCCTGTCAGAATTACACCCTCCTGGAT
GAACCCTTCCGAAGCACAGAGAACTCAGCAGGGTCCCAGGGGTGCGATAAAAACATGAGCGGCTGGTACC
GCTTTGTAGGGGAAGGAGGAGTAAGGATGTCGGAGACCTGTGTCCAGGTGCACCGATGCCAGACAGACGC
TCCCATGTGGCTGAATGGGACCCACCCTGCCCTTGGGGATGGCATCACCAACCACACTGCCTGTGCCCAT
TGGAGTGGCAACTGCTGTTTCTGGAAAACAGAGGTGCTGGTGAAGGCCTGCCCAGGCGGGTACCATGTGT
ACCGGTTGGAAGGCACTCCCTGGTGTAATCTGAGATACTGCACAGTTCCACGAGACCCATCCACTGTGGA
GGACAAGTGTGAGAAGGCCTGCCGCCCCGAGGAGGAGTGCCTTGCCCTCAACAGCACCTGGGGCTGTTTC
TGCAGACAGGACCTCAATAGTTCTGATGTCCACAGTTTGCAGCCTCAGCTAGACTGTGGGCCCAGGGAGA
TCAAGGTGAAGGTGGACAAATGTTTGCTGGGAGGCCTGGGTTTGGGGGAGGAGGTCATTGCCTACCTGCG
AGACCCAAACTGCAGCAGCATCTTGCAGACAGAGGAGAGGAACTGGGTATCTGTGACCAGCCCCGTCCAG
GCTAGTGCCTGCAGGAACATTCTGGAGAGAAATCAAACCCATGCCATCTACAAAAACACCCTCTCCTTGG
TCAATGATTTCATCATCAGAGACACCATCCTCAACATCAACTTCCAATGTGCCTACCCACTGGACATGAA
AGTCAGCCTCCAAGCTGCCTTGCAGCCCATTGTAAGTTCCCTGAACGTCAGTGTGGACGGGAATGGAGAG
TTCATTGTCAGGATGGCCCTCTTCCAAGACCAGAACTACACGAATCCTTACGAAGGGGATGCAGTTGAAC
TGTCTGTTGAGTCCGTGCTGTATGTGGGTGCCATCTTGGAACAAGGGGACACCTCCCGGTTTAACCTGGT
GTTGAGGAACTGCTATGCCACCCCCACTGAAGACAAGGCTGACCTTGTGAAGTATTTCATCATCAGAAAC
AGCTGCTCAAATCAACGTGATTCCACCATCCACGTGGAGGAGAATGGGCAGTCCTCGGAAAGCCGGTTCT
CAGTTCAGATGTTCATGTTTGCTGGACATTATGACCTAGTTTTCCTGCATTGTGAGATTCATCTCTGTGA
TTCTCTTAATGAACAGTGCCAGCCTTCTTGCTCAAGAAGTCAAGTCCGCAGTGAAGTACCGGCCATCGAC
CTAGCCCGGGTTCTAGATTTGGGGCCCATCACTCGGAGAGGTGCACAGTCTCCCGGTGTCATGAATGGAA
CCCCTAGCACTGCAGGGTTCCTGGTGGCCTGGCCTATGGTCCTCCTGACTGTCCTCCTGGCTTGGCTGTT
CTGA

Translation (537 aa):
MPHLMERMVGSGLLWLALVSCILTQASAVQRGYGNPIEASSYGLDLDCGAPGTPEAHVCFDPCQNYTLLD
EPFRSTENSAGSQGCDKNMSGWYRFVGEGGVRMSETCVQVHRCQTDAPMWLNGTHPALGDGITNHTACAH
WSGNCCFWKTEVLVKACPGGYHVYRLEGTPWCNLRYCTVPRDPSTVEDKCEKACRPEEECLALNSTWGCF
CRQDLNSSDVHSLQPQLDCGPREIKVKVDKCLLGGLGLGEEVIAYLRDPNCSSILQTEERNWVSVTSPVQ
ASACRNILERNQTHAIYKNTLSLVNDFIIRDTILNINFQCAYPLDMKVSLQAALQPIVSSLNVSVDGNGE
FIVRMALFQDQNYTNPYEGDAVELSVESVLYVGAILEQGDTSRFNLVLRNCYATPTEDKADLVKYFIIRN
SCSNQRDSTIHVEENGQSSESRFSVQMFMFAGHYDLVFLHCEIHLCDSLNEQCQPSCSRSQVRSEVPAID
LARVLDLGPITRRGAQSPGVMNGTPSTAGFLVAWPMVLLTVLLAWLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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