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Report for CCDS42177.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
42177.1 |
Public |
Homo sapiens |
16 |
MATCAP1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:653319](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:42177.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:653319](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 16 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 42177.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000290881.11 |
ENSP00000290881.7 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000290881.11](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000290881.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000290881](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000290881](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000563902.2 |
ENSP00000456838.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000563902.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000456838.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000563902](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000456838](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001040715.2 |
NP_001035805.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001040715.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001035805.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001040715](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001035805](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001035805.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001369680.1 |
NP_001356609.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001369680.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001356609.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001369680](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001356609](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001356609.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001369681.1 |
NP_001356610.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001369681.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001356610.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001369681](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001356610](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001356610.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001369682.1 |
NP_001356611.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001369682.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001356611.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001369682](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001356611](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001356611.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001369684.1 |
NP_001356613.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001369684.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001356613.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001369684](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001356613](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001356613.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001369685.1 |
NP_001356614.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001369685.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001356614.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001369685](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001356614](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001356614.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001369686.1 |
NP_001356615.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001369686.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001356615.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001369686](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001356615](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001356615.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 42177.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1416 nt): ATGGTGCTGGACTCAGGGGCTCAGGCGTATGATCAGGCACCCCCCAGCCCGCCTACCAGTCCCCCATCCC TGCGCCATAGGCTGAAGCCCTCAGACCGAGATGGGCCACCACTGTACCCCTGGTCTCAGTCCCTGGCCTT GCCCCTGGCTCTGGCAGTCCCCCCAGCGCTGCAGCCCCAGCCTGAGCAGCAGCCGTTCTCACAGATGCTC CTGGGCCACCGTGGCCACATGCGTCGCAGTGAGAGCACCTACTCTGTAAATAGTACTGGCCGGCGGGGGC GTGGCACCCTGGGACGGCCTCCACCTGGACGGGGACGGAACCCAGGTGGGGGCACCCTGCGGCCTGCAGC CTCCCTGCCTCACATTGCTAAGACTCAAAGGGATGCAGGCCATATTGCCAGCAAGAGCCCCTGCATGTTG GTGGCCCTGCGGCCAACCAACATGGACCGTGAGCGAGACAAGTTCTTCCAGTCCCATTACACCTACAATC CACAGTTTGAGTACCAGGAGCCCATGCCCACGGCTGTGCTGGAAAAGTACTGCGAGGCCTCTGGACAGTT CATCCATCAGGCAGTTGGCATCATTGAGGCTGTTCTGGAGAAGTTTGGAACCTATGAACACTTTGAGGCT GCCACTGGGGGGCAGCTGCTCACCAAGTGCCAGATATGGTCGATTGTGCGCAAATACATGCAGAAGGAGG GCTGCGCTGGGGAGGTTGTGGTGCAGCTGAGTGAGGACCTGCTGTCCCAGGCAGTGATGATGGTGGAGAA CAGCCGGCCCACATTGGCGATCAACCTGACCGGAGCCCGCCAGTACTGGTTGGAGGGCATGCTGCGGCAT GAGATAGGCACCCACTACCTGCGGGGCGTGAACAACGCGCGCCAGCCGTGGCACAACGCGGAGGGCCGGC TGCGGTACGGGCTGCGGCCGGCGAACCCCACGGAGGAGGGCCTGGCCAGCCTGCACAGCGTGCTGTTCCG CAAGCAGCCGTTCCTGTGGCGCGCTGCACTGCTCTACTACACCATCCACCGCGCCGCGCGCATGTCCTTC CGTCAGCTCTTCCAGGACCTGGAGCGCTACGTGCAGGACGCCGATGTGCGCTGGGAGTACTGCGTGCGCG CCAAGCGCGGCCAGACCGACACCTCGCTGCCAGGTTGTTTCAGCAAGGACCAGGTGTACCTGGACGGCAT CGTGCGCATTCTGCGACATCGCCAGACCATCGATTTCCCGTTGCTGACCTCACTGGGCAAGGTGTCCTAT GAGGATGTGGACCACCTGCGGCCCCATGGGGTGCTGGATAATACCCGGGTGCCCCACTTCATGCAGGACT TGGCACGCTACCGGCAGCAGCTGGAGCACATCATGGCCACCAACCGGCTGGATGAGGCGGAGCTGGGTCG CCTGCTACCCGACTGA
Translation (471 aa): MVLDSGAQAYDQAPPSPPTSPPSLRHRLKPSDRDGPPLYPWSQSLALPLALAVPPALQPQPEQQPFSQML LGHRGHMRRSESTYSVNSTGRRGRGTLGRPPPGRGRNPGGGTLRPAASLPHIAKTQRDAGHIASKSPCML VALRPTNMDRERDKFFQSHYTYNPQFEYQEPMPTAVLEKYCEASGQFIHQAVGIIEAVLEKFGTYEHFEA ATGGQLLTKCQIWSIVRKYMQKEGCAGEVVVQLSEDLLSQAVMMVENSRPTLAINLTGARQYWLEGMLRH EIGTHYLRGVNNARQPWHNAEGRLRYGLRPANPTEEGLASLHSVLFRKQPFLWRAALLYYTIHRAARMSF RQLFQDLERYVQDADVRWEYCVRAKRGQTDTSLPGCFSKDQVYLDGIVRILRHRQTIDFPLLTSLGKVSY EDVDHLRPHGVLDNTRVPHFMQDLARYRQQLEHIMATNRLDEAELGRLLPD
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