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Report for CCDS42183.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42183.1 Public Homo sapiens 16 ZFP90 24 110 108 CCDS HistoryNCBI Gene:146198Re-query CCDS DB by CCDS ID:42183.1Re-query CCDS DB by GeneID:146198See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42183.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398253.6 ENSP00000381304.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398253.6Link to Ensembl Protein Viewer:ENSP00000381304.2Re-query CCDS DB by Nucleotide ID:ENST00000398253Re-query CCDS DB by Protein ID:ENSP00000381304
Original member Current member EBI ENST00000563169.7 ENSP00000454418.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000563169.7Link to Ensembl Protein Viewer:ENSP00000454418.2Re-query CCDS DB by Nucleotide ID:ENST00000563169Re-query CCDS DB by Protein ID:ENSP00000454418
Original member Current member EBI ENST00000570495.5 ENSP00000460547.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000570495.5Link to Ensembl Protein Viewer:ENSP00000460547.1Re-query CCDS DB by Nucleotide ID:ENST00000570495Re-query CCDS DB by Protein ID:ENSP00000460547
Original member Current member NCBI NM_001305203.2 NP_001292132.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001305203.2Link to Protein Sequence:NP_001292132.1Re-query CCDS DB by Nucleotide ID:NM_001305203Re-query CCDS DB by Protein ID:NP_001292132Link to BLAST:NP_001292132.1
Original member Current member NCBI NM_133458.4 NP_597715.2 Accepted alive Link to Nucleotide Sequence:NM_133458.4Link to Protein Sequence:NP_597715.2Re-query CCDS DB by Nucleotide ID:NM_133458Re-query CCDS DB by Protein ID:NP_597715Link to BLAST:NP_597715.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292132.1 636 Q8TF47-1 636 100% 0 0
NP_597715.2 636 Q8TF47-1 636 100% 0 0

Chromosomal Locations for CCDS 42183.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 68539793 68539825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 68557998 68558124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 68558473 68558568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 68563044 68564698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1911 nt):
ATGGCCCCGAGGCCTCCGACCGCCGCGCCCCAGGAATCAGTGACATTCAAAGATGTGTCTGTGGACTTCA
CCCAGGAAGAATGGTACCATGTCGACCCTGCTCAGAGGAGCTTATACAGGGATGTGATGCTGGAGAACTA
TAGCCACCTGGTTTCTCTTGGATATCAAGTTTCCAAGCCAGAGGTGATCTTCAAATTGGAGCAAGGAGAA
GAGCCATGGATATCAGAGGGAGAAATCCAACGACCTTTCTATCCAGACTGGAAGACCAGGCCTGAAGTCA
AATCATCACATTTGCAGCAGGATGTATCAGAAGTATCCCACTGCACACATGATCTCTTACATGCTACATT
AGAAGACTCCTGGGATGTTAGCAGCCAGTTAGACAGGCAACAGGAAAACTGGAAGAGACATCTGGGATCA
GAGGCATCCACCCAGAAGAAAATAATTACACCACAAGAAAATTTTGAGCAAAATAAATTTGGTGAAAATT
CTAGATTGAACACCAATTTGGTTACACAACTGAACATTCCTGCAAGAATAAGGCCTAGTGAATGTGAGAC
CCTTGGAAGCAATTTGGGACATAATGCAGACTTACTTAATGAGAATAATATTCTTGCAAAAAAGAAACCC
TATAAGTGTGATAAATGTAGAAAAGCCTTTATTCATAGATCATCGCTTACTAAACATGAGAAAACACATA
AAGGAGAGGGAGCTTTCCCTAATGGAACAGATCAAGGAATTTATCCTGGAAAGAAACACCATGAATGTAC
CGACTGTGGGAAAACCTTTCTCTGGAAGACACAGCTTACTGAGCATCAGAGAATTCACACTGGGGAGAAA
CCCTTTGAATGCAATGTATGTGGAAAGGCCTTCAGGCATAGCTCATCTCTTGGTCAGCATGAGAATGCTC
ATACCGGAGAGAAACCCTATCAGTGTAGTCTCTGTGGGAAAGCCTTCCAGCGCAGCTCCTCCCTTGTTCA
ACACCAGCGAATTCACACTGGAGAGAAACCCTATCGATGTAATCTATGTGGGAGGTCCTTTAGGCATGGC
ACATCCCTCACTCAACACGAGGTCACACACAGTGGAGAGAAGCCCTTCCAGTGTAAGGAATGTGGGAAAG
CCTTTAGTCGATGTTCTTCCCTTGTCCAACATGAGAGGACTCATACTGGAGAGAAACCTTTTGAATGTAG
CATATGTGGGAGGGCTTTTGGTCAGAGCCCATCCCTTTATAAACATATGAGGATTCATAAGAGAGGCAAA
CCTTACCAAAGCAGTAACTACAGCATAGATTTCAAGCACAGCACATCTCTCACTCAAGATGAAAGCACTC
TTACCGAAGTGAAATCCTACCATTGTAATGACTGTGGGGAAGACTTTAGTCACATTACAGACTTTACTGA
CCATCAGAGGATCCATACTGCAGAGAACCCCTATGATTGTGAGCAGGCTTTTAGTCAGCAAGCTATTTCT
CATCCTGGAGAGAAACCCTATCAATGTAATGTATGTGGGAAAGCTTTCAAAAGGAGTACAAGTTTCATAG
AGCATCACAGAATTCATACTGGAGAGAAACCCTATGAATGTAATGAGTGTGGAGAAGCCTTTAGTCGACG
CTCATCGCTTACTCAACATGAGAGAACCCACACTGGAGAGAAACCCTATGAATGTATTGACTGTGGGAAA
GCCTTTAGTCAAAGTTCATCTCTCATTCAGCATGAGAGAACTCATACTGGAGAGAAGCCCTATGAATGTA
ATGAATGTGGGAGAGCCTTCCGAAAAAAAACCAACCTGCATGATCATCAGAGAATTCATACTGGAGAAAA
ACCCTATTCTTGTAAGGAATGTGGGAAAAACTTCAGCCGAAGTTCAGCTCTTACTAAACACCAGAGAATT
CATACTCGAAATAAACTCTAG

Translation (636 aa):
MAPRPPTAAPQESVTFKDVSVDFTQEEWYHVDPAQRSLYRDVMLENYSHLVSLGYQVSKPEVIFKLEQGE
EPWISEGEIQRPFYPDWKTRPEVKSSHLQQDVSEVSHCTHDLLHATLEDSWDVSSQLDRQQENWKRHLGS
EASTQKKIITPQENFEQNKFGENSRLNTNLVTQLNIPARIRPSECETLGSNLGHNADLLNENNILAKKKP
YKCDKCRKAFIHRSSLTKHEKTHKGEGAFPNGTDQGIYPGKKHHECTDCGKTFLWKTQLTEHQRIHTGEK
PFECNVCGKAFRHSSSLGQHENAHTGEKPYQCSLCGKAFQRSSSLVQHQRIHTGEKPYRCNLCGRSFRHG
TSLTQHEVTHSGEKPFQCKECGKAFSRCSSLVQHERTHTGEKPFECSICGRAFGQSPSLYKHMRIHKRGK
PYQSSNYSIDFKHSTSLTQDESTLTEVKSYHCNDCGEDFSHITDFTDHQRIHTAENPYDCEQAFSQQAIS
HPGEKPYQCNVCGKAFKRSTSFIEHHRIHTGEKPYECNECGEAFSRRSSLTQHERTHTGEKPYECIDCGK
AFSQSSSLIQHERTHTGEKPYECNECGRAFRKKTNLHDHQRIHTGEKPYSCKECGKNFSRSSALTKHQRI
HTRNKL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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