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Report for CCDS42220.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42220.1 Public Homo sapiens 16 VPS9D1 24 110 108 CCDS HistoryNCBI Gene:9605Re-query CCDS DB by CCDS ID:42220.1Re-query CCDS DB by GeneID:9605See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42220.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389386.8 ENSP00000374037.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000389386.8Link to Ensembl Protein Viewer:ENSP00000374037.3Re-query CCDS DB by Nucleotide ID:ENST00000389386Re-query CCDS DB by Protein ID:ENSP00000374037
Original member Current member NCBI NM_004913.3 NP_004904.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004913.3Link to Protein Sequence:NP_004904.2Re-query CCDS DB by Nucleotide ID:NM_004913Re-query CCDS DB by Protein ID:NP_004904Link to BLAST:NP_004904.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004904.2 631 Q9Y2B5-1 631 100% 0 0

Chromosomal Locations for CCDS 42220.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 89707861 89707954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89708427 89708531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89708857 89708956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89709227 89709435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89709777 89709906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89710586 89711010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89711327 89711412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89711882 89711969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89712047 89712099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89712460 89712522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89712605 89712716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89716462 89716624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89716730 89716822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89719027 89719102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89720763 89720861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1896 nt):
ATGGCCGCTGCGGCCGGGGACGGCACGGTGAAGCCGCTGCAGAGCGCCATGAAGCTTGCCAACGGGGCCA
TCGAGCTGGACACCGGCAACCGGCCCCGGGAGGCATACACGGAATACCTGAGGAGCATCCACTATATCTC
CCAGGTGTTACTAGAAGAAGTGGAAACCACTAAAGAAGCTGGGGAAACTGTGCCCCCCGACACCTCCAAG
ATGCTGAAGCTAGCACAGCAGTGTCTGGAGAGGGCCCAGTCGACGGCCGCCAAGCTTGGGAAAACACGCC
TGAAGCCAACCATGCCTGCAGCTGCTCCCATTCCCCAGCCTGCCGGCCGACACCGCCGTGTATACTCCGA
TGAAGGAGGAAAGCTCTCTCCTTTTCTGCCACCCGAGATCTTCCAGAAGCTTCAGGGGGCAGAGTCACAA
AGCTGTAAGAAAGAGCTGACGCCACTGGAGGAGGCCTCCCTGCAGAATCAGAAGCTGAAGGCTGCGTATG
AGGCCCGAATGGCGCGGCTAGACCCCAGCCAGGCCATGCAGAAGACATCCCTGACCCTCTCTCTACAGCG
GCAGATGATGGAGAACCTAGTGATTGCCAAAGCCCGGGAGGAGACACTCCAGAGAAAGATGGAGGAGCGC
CGGCTGCGGCTCCAGGAGGCCGCCAACAGGAGGTTTTGCAGCCAAGTCGCCCTGACCCCGGAGGAACGGG
AGCAGCGGGCCCTTTACGCCGCCATCCTGGAGTACGAACAGGACCATGACTGGCCGAAGCACTGGAAGGC
CAAGCTCAAGAGGAATCCGGGGGACCTGTCACTCGTGACCAGCCTGGTCTCACACCTGCTCAGCCTCCCC
GACCACCCGATCGCGCAGCTCCTGAGGCGGCTGCAGTGCTCCGTGTACAGCGCCCTGTATCCCGCCGTGA
GCAGAGCAGCCGCGCCAGCCCCAGGCTGCTGCCCCCCGACCCCCAACCCCGGAAGCCGACGGCTGCGGCC
CTCGCAGAGCCTCCATTGCATGCTGTCCCCGCCCGAGCCCAGCGCAGCCCCGCGGCCCCAGGACAGTCCC
CCCACGCCCCCACTCCAACCCGGCCCCGTGGGGTCTCCCTCACCCCTGGGGGACACCGCATCTGGATTGC
CAGACAAGGACAGCTCGTTCGAGGACCTGGAGCAGTTCCTGGGGACGTCTGAGCGGCAGGGCCGGGGCCG
TGGGGTACAGCCGGAGCCCCAGCTGCAGCAGCTGAAGACCGCGGTGGAGGAGATCCACAATGCCGTAGAC
AGGCTGCTCTCGCTGACCCTTCTGGCCTTCGAAGGCCTAAACACAGCTGCCTCCAAGGACCGCTGCCTGG
CCTGCATTGAGGAACCCTTTTTCTCCCCGCTGTGGCCTCTGCTGCTGGCCCTGTACAGGAGCGTGCACCG
AGCCCGGGAGGCTGCCCTGAGCAGGAGCATGGAGCTCTACAGGAATGCACCCCCCACCGCCATTGGCATC
CCCACCAAGCTCCTCCCCCAGAACCCTGAGGCCAAGGGGGCCACTGGCTACCCCTACTGCGCGGCGGCCC
AGGAGCTCGGACTGCTGGTCCTGGAGAGCTGCCCCCAGAAGAAGCTGGAGTGCATAGTGCGGACCCTGCG
GATCATCTGTGTCTGTGCGGAAGACTACTGCCCCACCCCAGAGGCCACACCCCAGGCCGGGCCCCCGCCC
ATCGCTGCAGCTGCCATTGGTGCCGATGACCTGCTGCCCATCCTGTCCTTCGTGGTGCTGAGGAGCGGCC
TCCCTCAGCTGGTGTCGGAGTGCGCGGCCCTGGAGGAGTTCATCCACGAGGGGTACCTGATCGGAGAGGA
GGGCTACTGCCTCACATCACTGCAGAGTGCCCTGAGCTACGTGGAGCTGCTGCCCCGGGGAGGCCTGGCC
AAGTAG

Translation (631 aa):
MAAAAGDGTVKPLQSAMKLANGAIELDTGNRPREAYTEYLRSIHYISQVLLEEVETTKEAGETVPPDTSK
MLKLAQQCLERAQSTAAKLGKTRLKPTMPAAAPIPQPAGRHRRVYSDEGGKLSPFLPPEIFQKLQGAESQ
SCKKELTPLEEASLQNQKLKAAYEARMARLDPSQAMQKTSLTLSLQRQMMENLVIAKAREETLQRKMEER
RLRLQEAANRRFCSQVALTPEEREQRALYAAILEYEQDHDWPKHWKAKLKRNPGDLSLVTSLVSHLLSLP
DHPIAQLLRRLQCSVYSALYPAVSRAAAPAPGCCPPTPNPGSRRLRPSQSLHCMLSPPEPSAAPRPQDSP
PTPPLQPGPVGSPSPLGDTASGLPDKDSSFEDLEQFLGTSERQGRGRGVQPEPQLQQLKTAVEEIHNAVD
RLLSLTLLAFEGLNTAASKDRCLACIEEPFFSPLWPLLLALYRSVHRAREAALSRSMELYRNAPPTAIGI
PTKLLPQNPEAKGATGYPYCAAAQELGLLVLESCPQKKLECIVRTLRIICVCAEDYCPTPEATPQAGPPP
IAAAAIGADDLLPILSFVVLRSGLPQLVSECAALEEFIHEGYLIGEEGYCLTSLQSALSYVELLPRGGLA
K


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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