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Report for CCDS42299.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42299.1 Public Homo sapiens 17 RDM1 24 110 108 CCDS HistoryNCBI Gene:201299Re-query CCDS DB by CCDS ID:42299.1Re-query CCDS DB by GeneID:201299See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42299.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000613308.4 ENSP00000482288.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000613308.4Link to Ensembl Protein Viewer:ENSP00000482288.1Re-query CCDS DB by Nucleotide ID:ENST00000613308Re-query CCDS DB by Protein ID:ENSP00000482288
Original member Current member NCBI NM_001034836.2 NP_001030008.1 Accepted alive Link to Nucleotide Sequence:NM_001034836.2Link to Protein Sequence:NP_001030008.1Re-query CCDS DB by Nucleotide ID:NM_001034836Re-query CCDS DB by Protein ID:NP_001030008Link to BLAST:NP_001030008.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001030008.1 236 Q8NG50-12 236 100% 0 0

Chromosomal Locations for CCDS 42299.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35922533 35922675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35924604 35924772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35925515 35925637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35930076 35930255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35930632 35930727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGGCGGAGTTGGTACCTTTTGCGGTTCCCATCGAGAGTGACAAAACCTTGCTAGTGTGGGAGCTGAGCT
CCGGACCCACGGCCGAGGCTTTGCATCATTCTCTGTTCACAGCATTTTCTCAGTTTGGCCTTCTGTATTC
AGTCCGGGTCTTCCCAAATGCTGCAGTGGCCCATCCTGGTTTCTATGCCGTCATTAAGTTTTATTCTGCA
AGGGCTGCCCACAGAGCCCAAAAGGCATGCGACCGGAAGCAGCTTTTTCAGAAATCTCCAGTCAAGGTTC
GTCTTGGCACCAGACATAAGGCAGTTCAACATCAAGCCCTTGCCCTGAACAGTTCCAAATGCCAAGAACT
GGCGAATTACTACTTTGGTTTCAATGGGTGTTCCAAAAGGATCATCAAGCTTCAGGAGCTTTCTGACCTT
GAAGAAAGGGAAAATGAAGATAGCATGGTGCCACTTCCGAAGCAAAGCCTGAAGTTCTTCTGTGCTTTAG
AAGTGGTGTTGCCATCCTGTGATTGCAGGAGTCCTGGCATTGGCTTGGTGGAGGAGCCTATGGATAAGGT
GGAGGAAGGACCATTATCATTCCTTATGAAAAGGAAGACAGCCCAGAAGCTTGCTATTCAGAAGGCTTTG
TCAGATGCATTCCAGAAACTGTTGATTGTTGTTCTAGGTAAGACTGTCTTGATCATCCTTGAAGTACTTC
AGTTTCAGTAA

Translation (236 aa):
MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSA
RAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDL
EERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQKLAIQKAL
SDAFQKLLIVVLGKTVLIILEVLQFQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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