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Report for CCDS42343.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42343.1 Public Homo sapiens 17 MEOX1 24 110 108 CCDS HistoryNCBI Gene:4222Re-query CCDS DB by CCDS ID:42343.1Re-query CCDS DB by GeneID:4222See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42343.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393661.2 ENSP00000377271.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393661.2Link to Ensembl Protein Viewer:ENSP00000377271.2Re-query CCDS DB by Nucleotide ID:ENST00000393661Re-query CCDS DB by Protein ID:ENSP00000377271
Original member Current member NCBI NM_001040002.2 NP_001035091.1 Accepted alive Link to Nucleotide Sequence:NM_001040002.2Link to Protein Sequence:NP_001035091.1Re-query CCDS DB by Nucleotide ID:NM_001040002Re-query CCDS DB by Protein ID:NP_001035091Link to BLAST:NP_001035091.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035091.1 139 P50221-3 139 100% 0 0

Chromosomal Locations for CCDS 42343.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 43641910 43642032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43643488 43643660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43661066 43661189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGGGGACCAGCAGCCTGGGCCTGGTGGACACCACAGGAGGCCCAGGCGATGACTACGGGGTGCTTGGGA
GCACTGCCAATGAGACAGAGAAGAAATCATCCAGGCGGAGAAAGGAGAGTTCAGACAACCAGGAGAACAG
AGGGAAGCCGGAGGGCAGCAGCAAAGCCCGCAAGGAGAGGACGGCCTTCACCAAGGAGCAGCTGCGAGAG
CTGGAGGCAGAGTTTGCCCATCATAACTACCTGACTCGGCTCCGCAGATATGAGATTGCGGTAAACCTGG
ACCTCTCTGAGCGCCAGGTCAAAGTGTGGTTCCAGAACCGAAGGATGAAGTGGAAGCGTGTGAAGGGAGG
TCAGCCCATCTCCCCCAATGGGCAGGACCCTGAGGATGGGGACTCCACAGCCTCTCCAAGTTCAGAGTGA

Translation (139 aa):
MGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQENRGKPEGSSKARKERTAFTKEQLRE
LEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQDPEDGDSTASPSSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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