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Report for CCDS4235.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4235.1 Public Homo sapiens 5 WDR55 24 110 108 CCDS HistoryNCBI Gene:54853Re-query CCDS DB by CCDS ID:4235.1Re-query CCDS DB by GeneID:54853See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4235.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358337.10 ENSP00000351100.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358337.10Link to Ensembl Protein Viewer:ENSP00000351100.5Re-query CCDS DB by Nucleotide ID:ENST00000358337Re-query CCDS DB by Protein ID:ENSP00000351100
Original member Current member NCBI NM_017706.5 NP_060176.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017706.5Link to Protein Sequence:NP_060176.3Re-query CCDS DB by Nucleotide ID:NM_017706Re-query CCDS DB by Protein ID:NP_060176Link to BLAST:NP_060176.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060176.3 383 Q9H6Y2-1 383 100% 0 0

Chromosomal Locations for CCDS 4235.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140664913 140665103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140668234 140668334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140668415 140668502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140668612 140668791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140668891 140668990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140669079 140669248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140669333 140669654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1152 nt):
ATGGACCGCACTTGTGAGGAGAGGCCCGCTGAGGATGGGAGCGACGAGGAGGACCCAGACTCCATGGAAG
CCCCAACCCGGATCCGGGACACTCCGGAAGACATCGTGCTGGAAGCTCCGGCTAGTGGGCTGGCGTTCCA
TCCGGCCCGTGACCTACTGGCTGCAGGGGACGTGGACGGGGACGTGTTCGTCTTTTCCTACTCTTGCCAA
GAGGGAGAAACCAAGGAGCTCTGGTCATCAGGTCACCATCTCAAGGCCTGCCGAGCTGTGGCCTTCTCTG
AAGATGGGCAGAAGCTCATTACTGTCTCCAAGGACAAAGCCATCCATGTTCTAGATGTGGAGCAGGGCCA
ACTGGAAAGACGTGTTTCCAAGGCTCATGGTGCCCCCATCAATAGTCTTCTGCTGGTGGATGAGAATGTT
CTGGCCACTGGGGATGACACAGGTGGTATCTGTCTCTGGGACCAGCGGAAGGAGGGCCCCTTAATGGATA
TGAGGCAACATGAAGAGTACATCGCAGACATGGCTCTGGATCCAGCCAAAAAGCTGCTGCTGACAGCCAG
CGGGGATGGCTGCCTTGGCATCTTCAACATTAAGAGGCGTCGGTTTGAGCTGCTCTCAGAACCTCAGTCT
GGGGACCTGACCTCTGTCACTCTCATGAAATGGGGGAAGAAGGTAGCCTGTGGCTCCAGTGAAGGTACCA
TCTACCTCTTCAATTGGAATGGCTTTGGGGCCACAAGTGACCGCTTTGCCCTGAGAGCTGAATCTATCGA
CTGCATGGTTCCAGTCACCGAGAGTCTGCTGTGTACTGGCTCCACTGATGGAGTCATCAGGGCTGTGAAC
ATCCTACCGAACCGAGTGGTGGGCAGTGTGGGCCAGCACACTGGGGAGCCTGTGGAGGAGCTGGCCCTCT
CCCACTGTGGCCGCTTCCTGGCCAGTAGTGGCCATGACCAGCGCCTCAAGTTTTGGGACATGGCCCAGCT
GCGAGCTGTGGTGGTGGATGACTACCGTCGGCGCAAAAAAAAGGGAGGACCACTGCGGGCTCTGAGCAGC
AAGACTTGGAGCACCGATGACTTCTTCGCAGGACTGAGGGAAGAGGGAGAAGACTCCATGGCTCAGGAAG
AAAAGGAGGAGACTGGGGATGACAGTGACTGA

Translation (383 aa):
MDRTCEERPAEDGSDEEDPDSMEAPTRIRDTPEDIVLEAPASGLAFHPARDLLAAGDVDGDVFVFSYSCQ
EGETKELWSSGHHLKACRAVAFSEDGQKLITVSKDKAIHVLDVEQGQLERRVSKAHGAPINSLLLVDENV
LATGDDTGGICLWDQRKEGPLMDMRQHEEYIADMALDPAKKLLLTASGDGCLGIFNIKRRRFELLSEPQS
GDLTSVTLMKWGKKVACGSSEGTIYLFNWNGFGATSDRFALRAESIDCMVPVTESLLCTGSTDGVIRAVN
ILPNRVVGSVGQHTGEPVEELALSHCGRFLASSGHDQRLKFWDMAQLRAVVVDDYRRRKKKGGPLRALSS
KTWSTDDFFAGLREEGEDSMAQEEKEETGDDSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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