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Report for CCDS42380.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42380.1 Public Homo sapiens 17 RECQL5 24 110 108 CCDS HistoryNCBI Gene:9400Re-query CCDS DB by CCDS ID:42380.1Re-query CCDS DB by GeneID:9400See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42380.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317905.10 ENSP00000317636.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317905.10Link to Ensembl Protein Viewer:ENSP00000317636.5Re-query CCDS DB by Nucleotide ID:ENST00000317905Re-query CCDS DB by Protein ID:ENSP00000317636
Original member Current member NCBI NM_004259.7 NP_004250.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004259.7Link to Protein Sequence:NP_004250.4Re-query CCDS DB by Nucleotide ID:NM_004259Re-query CCDS DB by Protein ID:NP_004250Link to BLAST:NP_004250.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004250.4 991 O94762-1 991 100% 0 0

Chromosomal Locations for CCDS 42380.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 75627422 75627522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75627623 75627692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75628218 75628442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75628672 75628762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75628934 75629475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75629708 75629842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75630184 75630277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75630619 75630692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75630779 75630837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75630974 75631010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75631150 75631249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75631450 75631668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75651186 75651265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75658298 75658460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75660955 75661066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75661606 75661708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75662479 75662997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75665051 75665172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75666428 75666557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2976 nt):
ATGAGCAGCCACCATACCACCTTTCCTTTTGACCCTGAGCGGCGAGTCCGGAGTACGCTGAAGAAGGTCT
TTGGGTTTGACTCTTTTAAGACGCCTTTACAGGAGAGTGCGACCATGGCTGTAGTAAAAGGTAACAAGGA
CGTCTTTGTGTGCATGCCCACAGGGGCAGGAAAATCCCTATGCTATCAGCTCCCTGCTCTGTTGGCCAAA
GGCATCACCATTGTAGTCTCTCCTCTCATTGCTTTGATTCAGGACCAAGTGGACCACTTGCTAACCCTAA
AGGTACGAGTAAGTTCCCTGAACTCGAAGCTCTCTGCACAGGAAAGGAAGGAGCTGCTTGCTGACCTGGA
GCGAGAAAAGCCCCAGACCAAGATTCTGTACATCACCCCAGAGATGGCAGCTTCATCCTCCTTCCAGCCC
ACCCTGAACTCCCTGGTGTCCCGCCACCTGCTGTCTTACTTGGTGGTGGATGAAGCTCATTGTGTTTCCC
AATGGGGGCATGACTTTCGTCCTGACTACTTGCGTCTGGGTGCCCTGCGCTCCCGCCTGGGACATGCCCC
TTGTGTGGCTCTGACCGCCACAGCCACCCCACAGGTCCAAGAGGACGTGTTTGCTGCCCTGCACCTGAAG
AAACCAGTTGCCATCTTCAAGACTCCCTGCTTCCGGGCCAACCTCTTCTATGATGTGCAATTCAAGGAAC
TGATTTCTGATCCCTATGGGAACCTGAAGGACTTCTGCCTTAAGGCTCTTGGACAGGAGGCTGATAAAGG
GTTATCTGGCTGCGGCATTGTGTACTGCAGGACTAGAGAGGCTTGTGAACAGCTGGCCATAGAGCTCAGC
TGCAGGGGTGTGAACGCCAAGGCTTACCATGCAGGGCTGAAGGCCTCTGAAAGAACGCTGGTGCAGAACG
ACTGGATGGAGGAGAAGGTCCCTGTAATTGTTGCAACCATTAGTTTTGGGATGGGAGTGGATAAAGCCAA
TGTCAGGTTTGTCGCCCATTGGAATATTGCCAAGTCTATGGCTGGGTACTACCAGGAGTCTGGCCGGGCT
GGCAGGGATGGGAAGCCTTCCTGGTGCCGTCTCTATTACTCCAGGAATGACCGGGACCAAGTCAGCTTCC
TGATCAGGAAGGAAGTAGCAAAACTCCAGGAAAAGAGAGGAAACAAAGCATCTGATAAAGCCACTATCAT
GGCCTTTGATGCCCTGGTGACCTTCTGTGAAGAACTGGGGTGCCGCCATGCCGCCATTGCCAAGTACTTC
GGGGATGCGCTGCCTGCCTGCGCCAAAGGCTGCGACCACTGCCAGAACCCCACGGCCGTGCGGAGGCGGC
TGGAGGCCTTGGAGCGCAGCAGCAGCTGGAGCAAGACCTGCATCGGGCCCTCCCAGGGGAACGGCTTTGA
CCCCGAGCTGTATGAGGGAGGCCGCAAGGGCTACGGGGACTTCAGCAGGTATGACGAAGGTTCTGGAGGC
AGCGGGGATGAAGGCAGAGATGAGGCCCACAAGCGGGAGTGGAACCTCTTCTATCAGAAGCAGATGCAGC
TGCGCAAGGGCAAAGACCCCAAGATAGAAGAATTTGTACCCCCAGATGAGAACTGTCCCCTGAAAGAGGC
TTCTAGCAGGAGGATCCCCAGGCTGACTGTGAAGGCACGGGAGCACTGCCTGCGGCTTCTGGAGGAGGCG
CTGAGCAGCAACCGCCAGTCAACACGTACCGCTGATGAAGCTGACCTCCGGGCCAAGGCCGTGGAGCTGG
AACATGAGACATTCCGGAACGCCAAGGTGGCCAACCTCTACAAGGCCAGCGTGCTGAAGAAGGTGGCCGA
TATCCACAGAGCCTCCAAGGATGGGCAGCCCTATGACATGGGAGGCAGTGCCAAGAGCTGCAGTGCCCAA
GCTGAGCCCCCGGAGCCCAATGAGTATGACATTCCACCAGCCTCCCATGTGTACTCGCTCAAACCCAAGC
GGGTGGGAGCTGGTTTCCCCAAAGGCTCCTGCCCGTTCCAGACGGCCACGGAACTGATGGAGACAACTCG
GATCAGGGAGCAAGCCCCCCAGCCCGAGCGGGGAGGCGAGCACGAGCCCCCGAGCCGGCCCTGTGGCCTC
CTGGATGAGGATGGGAGTGAGCCCCTCCCTGGGCCCAGAGGGGAGGTCCCTGGAGGCAGCGCTCACTATG
GGGGGCCCTCCCCTGAGAAGAAGGCAAAAAGTTCCTCTGGGGGCAGCTCCCTTGCCAAGGGCCGGGCTAG
CAAGAAACAGCAGCTCCTAGCCACAGCGGCCCACAAGGATTCTCAGAGCATCGCCCGCTTCTTCTGCCGA
AGGGTGGAAAGCCCAGCTCTGCTGGCATCAGCCCCAGAGGCAGAAGGTGCCTGCCCCTCCTGTGAGGGGG
TTCAGGGACCCCCGATGGCCCCAGAGAAGTACACAGGGGAGGAAGATGGAGCCGGGGGACATTCGCCTGC
CCCTCCCCAGACTGAGGAGTGCCTCAGGGAGAGGCCAAGCACCTGCCCGCCCAGAGACCAGGGCACCCCT
GAAGTCCAGCCCACCCCTGCAAAGGACACATGGAAGGGCAAGCGGCCTCGATCCCAGCAGGAGAACCCAG
AGAGCCAGCCTCAGAAGAGGCCACGCCCCTCAGCCAAGCCCTCCGTCGTAGCTGAGGTCAAGGGCAGCGT
CTCGGCCAGCGAACAGGGCACCTTGAATCCCACGGCTCAAGACCCCTTCCAGCTCTCCGCTCCTGGCGTC
TCCTTGAAGGAGGCTGCAAATGTTGTGGTCAAGTGCCTCACCCCTTTCTACAAGGAGGGCAAGTTTGCTT
CCAAGGAGTTGTTTAAAGGCTTTGCCCGCCACCTCTCACACTTGCTGACTCAGAAGACCTCTCCTGGAAG
GAGCGTGAAAGAAGAGGCCCAGAACCTCATCAGGCACTTCTTCCATGGCCGGGCCCGGTGCGAGAGCGAA
GCTGACTGGCATGGCCTGTGTGGCCCCCAGAGATGA

Translation (991 aa):
MSSHHTTFPFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAK
GITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYITPEMAASSSFQP
TLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDVFAALHLK
KPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLKALGQEADKGLSGCGIVYCRTREACEQLAIELS
CRGVNAKAYHAGLKASERTLVQNDWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRA
GRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQEKRGNKASDKATIMAFDALVTFCEELGCRHAAIAKYF
GDALPACAKGCDHCQNPTAVRRRLEALERSSSWSKTCIGPSQGNGFDPELYEGGRKGYGDFSRYDEGSGG
SGDEGRDEAHKREWNLFYQKQMQLRKGKDPKIEEFVPPDENCPLKEASSRRIPRLTVKAREHCLRLLEEA
LSSNRQSTRTADEADLRAKAVELEHETFRNAKVANLYKASVLKKVADIHRASKDGQPYDMGGSAKSCSAQ
AEPPEPNEYDIPPASHVYSLKPKRVGAGFPKGSCPFQTATELMETTRIREQAPQPERGGEHEPPSRPCGL
LDEDGSEPLPGPRGEVPGGSAHYGGPSPEKKAKSSSGGSSLAKGRASKKQQLLATAAHKDSQSIARFFCR
RVESPALLASAPEAEGACPSCEGVQGPPMAPEKYTGEEDGAGGHSPAPPQTEECLRERPSTCPPRDQGTP
EVQPTPAKDTWKGKRPRSQQENPESQPQKRPRPSAKPSVVAEVKGSVSASEQGTLNPTAQDPFQLSAPGV
SLKEAANVVVKCLTPFYKEGKFASKELFKGFARHLSHLLTQKTSPGRSVKEEAQNLIRHFFHGRARCESE
ADWHGLCGPQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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