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Report for CCDS4241.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4241.1 Public Homo sapiens 5 PCDHAC1 24 110 108 CCDS HistoryNCBI Gene:56135Re-query CCDS DB by CCDS ID:4241.1Re-query CCDS DB by GeneID:56135See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4241.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253807.3 ENSP00000253807.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000253807.3Link to Ensembl Protein Viewer:ENSP00000253807.2Re-query CCDS DB by Nucleotide ID:ENST00000253807Re-query CCDS DB by Protein ID:ENSP00000253807
Original member Current member NCBI NM_018898.5 NP_061721.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018898.5Link to Protein Sequence:NP_061721.2Re-query CCDS DB by Nucleotide ID:NM_018898Re-query CCDS DB by Protein ID:NP_061721Link to BLAST:NP_061721.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061721.2 963 Q9H158-1 963 100% 0 0

Chromosomal Locations for CCDS 4241.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140926893 140929325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140978949 140979007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140982475 140982563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141009627 141009937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2892 nt):
ATGGTGGGCTGTGGGGTGGCAGTTTTATGTTTGTGGGTTTCCTGCGGCGCTGCAGCGGGACAGCTCGAGT
AC
TCAGTGCCGGAGGAGACGGAGCGGGGCGTAGCCGTAGGCAATCTCTCCGCGGACTTGAGGCTGCCAGC
G
GCCGCTATGTCCTCGCGGAACTTTCGCTTCCTTTCCAGCCACCGCGAGCTCTACTTCGGGGTGGATCTA
CCC
AGCGGCAATTTGGTGGTCAGAGAGCCGGCGGACCGCGAACAGCTGTGCAGGGCCAAAGCTGCCTGCG
TC
TTGACCTACGACCTGGTGCTCGAGGACCCGCTGGAGCTGCACAAGATTCGGATTCACGTCCTGGACAC
C
AATGACAACTCACCTCTCTTTCCTGCCGGCGACGTGCAGCTGCACATCCCCGAGTTCCTGACGCCCGGA
GCC
CGCTTTACTCTCCCGAATGCCCAAGATGACGACGAGGGAAGCAATGGGATACTAAGCTACAGCCTAA
GC
CCCAGTCAGCACTTTCGCCTGGACATGGGATCGCGGGTTGACGGCAGCGAATACCCGGAGTTGGTGTT
G
GAGAAAGCACTGGATCGCGAACAGCGCGCCACCCACCTGCTGGTGCTTACAGCTCGGGACGGCGGGCTA
CCT
GCCCGCTCAGGAGACGCACAAGTCACCATCATTGTGGTGGACACAAATGACAACGCGCCTGTATTTG
AG
CGCTCCGTATACCGCACCAAGGTTCCAGAGACTGCACCCAATGGGACTGTGTTATTCCGAGTTCAAGC
C
TTGGATCCAGATGAAGGGTCCAATGGGGAAGTCCAGTACTCCCTAAGCAACAGCACGCAAGCAGAGCTG
CGA
CACCGCTTTCACGTGCACCCTAAAAGTGGGGAGGTGCAAGTAGCTGCTTCACTAGGTCCGCCTGAAA
CG
CTCTTGGAGGCATACATTGAGGCGAGGGACGAAGGTGTCTTTGGTTTAGCTAGCACCGCTAAACTGCT
G
GTGGAGGTGACTGACGTGAACGATCATGCCCCCGAACTGGACTTCCTGACTCTTTCGAACCCAGTACCT
GAG
GACGCTGCCCCTGGCACAGTGATTGCTCTCTTTAGTGTAAAGGATGAAGACCTCGATTCTAATGGTA
GG
GTCATTTGTGGCATGTCTAGTGCAGGCCCTTTTCAGCTGACGGCTTCCTTTGACAACTACTACAGCCT
G
CTGATTGATGGGCCCCTGGACCGGGAGCAGATCAGTGAATACCAAGTCCTGATCACGGCCTCAGATAGT
GGC
TCACCCCCACTTAGCACCCGAAGGACAATCACTGTGTCAGTTGCTGATGTGAATGACAATACACCAA
AC
TTTCCTCAACCCCAGCAGGAACTTTTCGTTGCTGAAAACAATGGCCCTGGGGCCTCTCTAGGCCGAGT
G
TTTGCCCAGGACCCCGACCTGGGGAAGAATGGCCTTGTCTCTTATGAGCTGTTGGATGTTATCTCTGAA
GGG
CCATCAGCCTCTAGCTTGCTGGCAGTGGAATCATCCAGTGGGGCCATCACTGCCAAAACTTCCTTTG
AC
TTTGAGCAGCTCAGGGGGTTTCATTTCCAAGTAGAAGGCCGGGATGGTGGCATTCCTCCCAGAAGTGC
A
ACAGTGACTATAAACTTGTTTGTGGTAGATAGGAATGACAATTATCCGGTTATCTTGTTTCCCTTGCCC
AGA
AATGGTTCTGTCCCAGTGGAAATTGTGCCCCGCTCTGCCAGGACTGGACACTTGGTCACAAAAGTGG
TA
GCAGAGGATGCTGACAGTGGTTCTAATGCCTGGCTTTCCTACCACATCTCCCGGGCGTCTGACTCTAG
T
CTCTTTAGAATTTCAGCCAATATAGGTGAGCTCCGTACTGCTCGCTTAGTTCTTCCCACTGATGCAGTT
AAG
CAGAGGGTGGTGGTAGTGGTTCGGGACCATGGAGACCCACCACTTTCCTCCTCTGTCACTCTGGGTG
TG
CTGTTGAGCAACTCTGTCCCTCAGTTACTTCCAGACTTTGAAGATGTCTGGGAACCAGGAGGGCAGCT
T
TCTGCCCAGAACTTGTATTTAGTAATTGCCTTGGCTTGTATTTCCTTTTTATTTCTGGGGTGCTTACTT
TTC
TTCGTGTGTACCAAGTTGCACCAGAGCCCAGGCTGTTGCGCTCAGAGCTGCTGTCGCTCTACAGAGG
AT
CTGAGGTATGGAAGTAAGATGGTTTCAAATCCTTGCATGACATCAGCCACCATAGATGTCACTACAGT
T
GAGAGACTTTCTCAGACTTATCTCTATCGGGCCTCTCTGGGACTTGGTTCTGATAATAACAGTTTGCTG
TTG
CGTGGGGAGTACAATGCTGCCGACCTGCGAAATCTTGCCACTGGGGTAGGACTGAATTTGCCAATAT
CC
TGTATTCAGATTCGGAATAGGAAAGGGGATCACGCTAATGTCAATGCCATGCCACGACAGCCCAACCC
T
GACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATT
CTA
CGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGG
CA
GGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGG
C
AACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATC
TCC
ATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGG
AG
ACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCAC
G
ACTGACAACAGTGACCAGTGA


Translation (963 aa):
MVGCGVAVLCLWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSSHRELYFGVDL
P
SGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSPLFPAGDVQLHIPEFLTPG
A
RFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEYPELVLEKALDREQRATHLLVLTARDGGL
P
ARSGDAQVTIIVVDTNDNAPVFERSVYRTKVPETAPNGTVLFRVQALDPDEGSNGEVQYSLSNSTQAEL
R
HRFHVHPKSGEVQVAASLGPPETLLEAYIEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVP
E
DAAPGTVIALFSVKDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDS
G
SPPLSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVSYELLDVISE
G
PSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINLFVVDRNDNYPVILFPLP
R
NGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRASDSSLFRISANIGELRTARLVLPTDAV
K
QRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQLLPDFEDVWEPGGQLSAQNLYLVIALACISFLFLGCLL
F
FVCTKLHQSPGCCAQSCCRSTEDLRYGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLL
L
RGEYNAADLRNLATGVGLNLPISCIQIRNRKGDHANVNAM
PRQPNPDWRYSASLRAGMHSSVHLEEAGI
L
RAGPGGPDQQWPTVSSATP
EPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAII
S
IRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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