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Report for CCDS42445.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42445.2 Public Homo sapiens 18 DIPK1C 24 110 108 CCDS HistoryNCBI Gene:125704Re-query CCDS DB by CCDS ID:42445.2Re-query CCDS DB by GeneID:125704See the combined annotation on chromosome 18 in Sequence Viewer

Public Note for CCDS 42445.1
The coding region has been updated to represent an alternate splice pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 42445.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343998.8 ENSP00000344331.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000343998.8Link to Ensembl Protein Viewer:ENSP00000344331.6Re-query CCDS DB by Nucleotide ID:ENST00000343998Re-query CCDS DB by Protein ID:ENSP00000344331
Original member Current member NCBI NM_001044369.3 NP_001037834.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001044369.3Link to Protein Sequence:NP_001037834.2Re-query CCDS DB by Nucleotide ID:NM_001044369Re-query CCDS DB by Protein ID:NP_001037834Link to BLAST:NP_001037834.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001037834.2 419 Q0P6D2-1 419 100% 0 0

Chromosomal Locations for CCDS 42445.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 74436501 74436719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74441952 74442116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74446606 74447283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74457062 74457259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGGCGCGGGCGGCGGGCGCGCGGGGCCCTGCCGGGTGGTGCAGGAGGCGCGGGCGCTGCGGGCGGGGCA
CGCTCCTCGCCTTCGCCGCGTGGACCGCGGGCTGGGTGCTGGCGGCCGCGCTGCTGCTCCGCGCGCACCC
GGGTGTCCTCTCCGAGCGCTGCACCGACGAGAAGAGCCGGCGCATCCTGGCCGCGCTGTGCCAGGACTAC
CAGGGCGGCACGCTGGCCGGGGACCTCTGCGAGGACCTGTGTGTGGCGGGAGAGCTGCTGTTCCAACGCT
GCCTGCACTACAACAGAGGCAAGAAGGTGCTGCAGGCCGACTGGCGCGGCCGGCCCGTGGTCCTCAAGTC
CAAGGAGGAGGCCTTCTCCAGCTTCCCGCCCCTCAGCCTGTTGGAAGAGGAGGCAGGGGAGGGTGGCCAG
GACATGCCCGAGGCCGAACTCCTCCTGATGGTGGCTGGGGAGGTCAAGAGCGCTCTGGGCCTGGAGTTGT
CCAACAGCAGCCTGGGGCCGTGGTGGCCGGGCAGGCGGGGCCCACGCTGGCGGGGACAGCTGGCCAGCCT
GTGGGCCCTGCTGCAGCAGGAGGAGTACGTCTACTTCAGCCTGCTGCAGGACCTGAGCCCACACGTGCTG
CCCGTGCTGGGTTCCTGCGGCCACTTCTACGCGGTGGAGTTCCTGGCCGCGGGCAGCCCCCACCACAGGG
CACTCTTCCCCCTGGACCGGGCCCCAGGTGCCCCTGGGGGTGGCCAGGCCAAGGCCATCAGTGACATCGC
ACTCAGCTTCTTGGACATGGTGAACCATTTTGACAGTGACTTTTCCCACCGCCTCCACCTCTGCGACATC
AAGCCGGAAAACTTTGCCATCCGGAGCGACTTCACAGTGGTGGCTATTGATGTGGACATGGCCTTTTTTG
AACCTAAAATGAGGGAAATCCTTGAGCAAAACTGCACAGGAGATGAAGACTGCAATTTCTTTGACTGTTT
TTCAAGATGTGATTTACGAGTCAACAAATGCGGAGCGCAGCGCGTAAACAACAACCTGCAGGTCATCTGT
GACAAAATATTTCGCCATTGGTTTTCCGCGCCTCTCAAGAGCTCTGCGGTCTCTTTCCAGCTTCAGCTGC
AGTTACAGGAGGCGGTGCAGGAATGTGCAGACCCTGGGGTCCCCAGTGGGAACACCCGGAGAGCAGCCTC
CAGCGTGTTCTGGAAGCTTCGCCAACTCCTCCAAGCCACACTGAGGGAGCTGCAGGAGGCAGAGAAGTAG

Translation (419 aa):
MARAAGARGPAGWCRRRGRCGRGTLLAFAAWTAGWVLAAALLLRAHPGVLSERCTDEKSRRILAALCQDY
QGGTLAGDLCEDLCVAGELLFQRCLHYNRGKKVLQADWRGRPVVLKSKEEAFSSFPPLSLLEEEAGEGGQ
DMPEAELLLMVAGEVKSALGLELSNSSLGPWWPGRRGPRWRGQLASLWALLQQEEYVYFSLLQDLSPHVL
PVLGSCGHFYAVEFLAAGSPHHRALFPLDRAPGAPGGGQAKAISDIALSFLDMVNHFDSDFSHRLHLCDI
KPENFAIRSDFTVVAIDVDMAFFEPKMREILEQNCTGDEDCNFFDCFSRCDLRVNKCGAQRVNNNLQVIC
DKIFRHWFSAPLKSSAVSFQLQLQLQEAVQECADPGVPSGNTRRAASSVFWKLRQLLQATLRELQEAEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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