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Report for CCDS4250.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4250.1 Public Homo sapiens 5 PCDHB8 24 110 108 CCDS HistoryNCBI Gene:56128Re-query CCDS DB by CCDS ID:4250.1Re-query CCDS DB by GeneID:56128See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4250.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000239444.4 ENSP00000239444.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000239444.4Link to Ensembl Protein Viewer:ENSP00000239444.2Re-query CCDS DB by Nucleotide ID:ENST00000239444Re-query CCDS DB by Protein ID:ENSP00000239444
Original member Current member NCBI NM_019120.5 NP_061993.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019120.5Link to Protein Sequence:NP_061993.3Re-query CCDS DB by Nucleotide ID:NM_019120Re-query CCDS DB by Protein ID:NP_061993Link to BLAST:NP_061993.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061993.3 801 Q9UN66 801 100% 0 0

Chromosomal Locations for CCDS 4250.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141178035 141180440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2406 nt):
ATGGAGGCCAGCGGGAAGCTCATTTGCAGACAAAGGCAAGTCCTTTTTTCCTTTCTCCTTTTGGGCTTAT
CTCTGGCGGGCGCGGCGGAACCTAGAAGCTATTCTGTGGTGGAGGAAACTGAGGGCAGCTCCTTTGTCAC
CAATTTAGCAAAGGACCTGGGTCTGGAGCAGAGGGAATTCTCCAGGCGGGGGGTTAGGGTTGTTTCCAGA
GGGAACAAACTACATTTGCAGCTCAATCAGGAGACCGCGGATTTGTTGCTAAATGAGAAATTGGACCGTG
AGGATCTGTGCGGTCACACAGAGCCCTGTGTGCTACGTTTCCAAGTGTTGCTAGAGAGTCCCTTCGAGTT
TTTTCAAGCTGAGCTGCAAGTAATAGACATAAACGACCACTCTCCAGTATTTCTGGACAAACAAATGTTG
GTGAAAGTATCAGAGAGCAGTCCTCCTGGGACTGCGTTTCCTCTGAAGAATGCTGAAGACTTAGATATAG
GCCAAAACAATATTGAGAACTATATAATCAGCCCCAACTCCTATTTTCGGGTCCTCACCCGCAAACGCAG
TGATGGCAGGAAATACCCAGAGCTGGTGCTGGACAAAGCGCTGGACCGAGAGGAAGAAGCTGAGCTCAGG
TTAACACTCACAGCACTGGATGGTGGCTCTCCGCCCAGATCTGGCACTGCTCAGGTCTACATTGAAGTTG
TCGATGTCAATGATAATGCCCCTGAATTTGAGCAGCCTTTCTATAGGGTGCAGATCTCTGAGGACAGTCC
AATAAGCTTCCTGGTTGTGAAGGTCTCTGCCACGGATGTAGACACAGGAGTCAACGGAGAGATTTCCTAT
TCACTTTTCCAAGCTTCAGATGAGATAAGCAAAACTTTTAAGGTCGATTTCTTGACAGGAGAAATTCGAC
TAAAGAAACAACTTGATTTCGAAAAATTTCAGTCCTATGAAGTCAATATCGAGGCGAGAGATGCTGGAGG
CTTTTCTGGAAAATGCACCGTTCTGATTCAAGTGATAGATGTGAACGACCATGCCCCAGAAGTTACCATG
TCTGCATTTACCAGCCCAATACCTGAGAATGCGCCTGAAACTGTGGTTGCACTTTTCAGTGTTTCAGACC
TTGATTCAGGAGAAAATGGGAAAATAAGTTGCTCCATTCAGGAGGATCTACCCTTCCTCCTGAAATCTTC
TGTGGGGAACTTTTACACCCTACTAACAGAGACACCACTAGACAGAGAAAGCAGAGCCGAGTACAACGTC
ACTATCACCGTCACTGACTTAGGGACACCCAGGCTGACAACACATCTCAATATGACCGTGCTGGTGTCGG
ACGTCAATGACAACGCCCCCGCCTTCACCCAAACCTCCTACACCCTGTTCGTCCGCGAGAACAACAGCCC
CGCCCTGCACATCGGCAGCGTCAGCGCCACAGACAGAGACTCGGGCACCAACGCCCAGGTCACCTACTCG
CTGCTGCCGCCCCAGGATCCGCACCTGCCCCTCGCCTCCCTGGTCTCCATCAACACAGACAACGGCCACC
TGTTCGCCCTCAGGTCGCTGGACTACGAGGCCCTGCAGGCGTTCGAGTTCCGGGTGGGCGCTTCAGACCG
CGGCTCCCCGGCTTTGAGCAGCGAGGCGCTGGTGCGCGTGCTGGTGCTGGACGCCAACGACAACTCGCCC
TTCGTGCTGTACCCGCTGCAGAATGGCTCCGCGCCCTGCACCGAGCTGGTGCCCCGGGCGGCCGAGCCGG
GCTACCTGGTGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAACGCCTGGCTGTCGTACCAGCT
GCTCAAGGCCACGGAGCCCGGGCTGTTCGGTGTGTGGGCGCACAATGGCGAGGTGCGCACCGCCAGGCTG
CTGAGCGAGCGCGACGCGGCCAAGCAGAGGCTGGTGGTGCTGGTCAAGGACAATGGCGAGCCTCCGTGCT
CGGCCACCGCCACGCTGCACGTGCTCCTGGTGGACGGCTTCTCCCAGCCCTACCTGCCGCTTCCGGAGGC
TGCCCCAGCCCAGGGCCAGGCCGACTCTCTCACCGTCTACCTGGTGGTGGCGTTGGCCTCGGTGTCTTCG
CTCTTCCTCTTCTCGGTGCTCCTGTTCGTGGCGGTGCTGCTGTGTAGGAGGAGCAGGGCGGCCTCGGTGG
GTCGCTGCTCAGTGCCTGAGGGCCCCTTTCCAGGGCATCTGGTGGACGTGAGGGGCACCGGGAGCCTGTC
TCAGAACTATCAGTACGAGGTGTGCCTGGCAGGAGGCTCAGGGACGAATGAGTTCCAGCTCCTGAAACCA
GTATTACCTAATATTCAGGGCCATTCTTTTGGGCCAGAAATGGAACAAAACTCTAACTTTAGGAATGGCT
TTGGTTTCAGCCTTCAGTTAAAGTAA

Translation (801 aa):
MEASGKLICRQRQVLFSFLLLGLSLAGAAEPRSYSVVEETEGSSFVTNLAKDLGLEQREFSRRGVRVVSR
GNKLHLQLNQETADLLLNEKLDREDLCGHTEPCVLRFQVLLESPFEFFQAELQVIDINDHSPVFLDKQML
VKVSESSPPGTAFPLKNAEDLDIGQNNIENYIISPNSYFRVLTRKRSDGRKYPELVLDKALDREEEAELR
LTLTALDGGSPPRSGTAQVYIEVVDVNDNAPEFEQPFYRVQISEDSPISFLVVKVSATDVDTGVNGEISY
SLFQASDEISKTFKVDFLTGEIRLKKQLDFEKFQSYEVNIEARDAGGFSGKCTVLIQVIDVNDHAPEVTM
SAFTSPIPENAPETVVALFSVSDLDSGENGKISCSIQEDLPFLLKSSVGNFYTLLTETPLDRESRAEYNV
TITVTDLGTPRLTTHLNMTVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYS
LLPPQDPHLPLASLVSINTDNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVLVLDANDNSP
FVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARL
LSERDAAKQRLVVLVKDNGEPPCSATATLHVLLVDGFSQPYLPLPEAAPAQGQADSLTVYLVVALASVSS
LFLFSVLLFVAVLLCRRSRAASVGRCSVPEGPFPGHLVDVRGTGSLSQNYQYEVCLAGGSGTNEFQLLKP
VLPNIQGHSFGPEMEQNSNFRNGFGFSLQLK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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