NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42587.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42587.1 Public Homo sapiens 19 FAM83E 24 110 108 CCDS HistoryNCBI Gene:54854Re-query CCDS DB by CCDS ID:42587.1Re-query CCDS DB by GeneID:54854See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42587.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263266.4 ENSP00000263266.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263266.4Link to Ensembl Protein Viewer:ENSP00000263266.2Re-query CCDS DB by Nucleotide ID:ENST00000263266Re-query CCDS DB by Protein ID:ENSP00000263266
Original member Current member NCBI NM_017708.4 NP_060178.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017708.4Link to Protein Sequence:NP_060178.2Re-query CCDS DB by Nucleotide ID:NM_017708Re-query CCDS DB by Protein ID:NP_060178Link to BLAST:NP_060178.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060178.2 478 Q2M2I3 478 100% 0 0

Chromosomal Locations for CCDS 42587.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 48601109 48601369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48603494 48603911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48609876 48610000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48610680 48610847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48612908 48613372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGGCGGCCTCCCAGCTGGCGGCGCTGGAAGGAGTGGACTCCGGTCCCAGGGTGCCCGGGGCCAGCCCCG
GCTTTCTATATTCCGAGGGCCAGCGGCTGGCACTGGAGGCTCTGTTGAGCAAGGGCGCGGAGGCGTTCCA
GACCTGCGTGCAGCGCGAGGAGCTGTGGCCCTTCCTCAGTGCGGATGAGGTTCAGGGCTTGGCAGCGGCA
GCTGAAGACTGGACAGTGGCCAAGCAGGAGCCCAGCGGGATGGCAGAGGGAGCCACCACCACCGATGTGG
ACGCGGGCAGCCTGAGCTACTGGCCTGGGCAGTCGGAGCAGCCGGCGCCCGTCCTGCGGCTGGGCTGGCC
AGTGGACTCTGCGTGGAAAGGCATCACCCGGGCGCAGCTGTACACCCAGCCTCCTGGAGAGGGTCAGCCG
CCCCTCAAGGAGCTGGTGCGGCTGGAGATCCAGGCTGCCCACAAGCTGGTGGCCGTGGTCATGGACGTCT
TCACTGACCCAGACCTGCTTTTGGACTTGGTGGATGCTGCCACGCGCCGCTGGGTACCTGTCTACCTGCT
CCTGGACCGCCAGCAGCTGCCTGCCTTCCTGGAACTGGCCCAGCAGCTGGGGGTGAACCCCTGGAACACG
GAGAACGTGGATGTCCGTGTCGTGCGGGGCTGCAGCTTCCAGAGCCGCTGGCGACGGCAGGTGAGCGGCA
CCGTGCGGGAGAAGTTTGTGCTGCTGGACGGCGAGAGGGTCATCTCAGGATCCTACAGCTTCACGTGGAG
TGACGCACGCCTGCACCGAGGCCTGGTGACCCTGCTGACTGGTGAAATTGTTGACGCCTTCAGCCTTGAG
TTCCGGACGCTGTACGCGGCCTCCTGCCCGCTCCCACCTGCGCCCCCCCAGAAACCCTCGGTCATAGGTG
GCCTGCAGCGGGGCCGCAGCCCGCACCGCGTGTCCCGCCGCCGCTCCGTGGCCCCCGCGTCGCCTCCGCC
GCCTGACGGCCCGCTGGCCCACCGCCTGGCCGCCTGCCGCGTCTCCCCTGCTACCCCGGGGCCGGCACTC
AGTGACATTCTAAGGAGTGTGCAGCGCGCCCGGACCCCCAGCGGCCCCCCGGCCCGGCCCAGCCGCTCCA
TGTGGGACCTAAGCCGCCTGTCCCAGCTGTCTGGCTCCAGTGATGGGGACAACGAGCTCAAGAAATCCTG
GGGCTCCAAGGACACTCCAGCCAAGGCTCTGATGAGGCAGCGGGGCACTGGAGGAGGCCCCTGGGGGGAA
GTGGACTCCCGACCTCCGTGGGGCGGTGCCCTGCCCCTGCCCCCCGCCCACCGCCTCCGCTATCTGTCCC
CAGCCCGAAGGCGGTTCGGTGGGGATGCTACATTCAAACTTCAAGAGCCCAGAGGCGTCAGGCCGTCAGA
CTGGGCCCCCCGGGCAGGACTTGGGGGGCAACCCTGA

Translation (478 aa):
MAASQLAALEGVDSGPRVPGASPGFLYSEGQRLALEALLSKGAEAFQTCVQREELWPFLSADEVQGLAAA
AEDWTVAKQEPSGMAEGATTTDVDAGSLSYWPGQSEQPAPVLRLGWPVDSAWKGITRAQLYTQPPGEGQP
PLKELVRLEIQAAHKLVAVVMDVFTDPDLLLDLVDAATRRWVPVYLLLDRQQLPAFLELAQQLGVNPWNT
ENVDVRVVRGCSFQSRWRRQVSGTVREKFVLLDGERVISGSYSFTWSDARLHRGLVTLLTGEIVDAFSLE
FRTLYAASCPLPPAPPQKPSVIGGLQRGRSPHRVSRRRSVAPASPPPPDGPLAHRLAACRVSPATPGPAL
SDILRSVQRARTPSGPPARPSRSMWDLSRLSQLSGSSDGDNELKKSWGSKDTPAKALMRQRGTGGGPWGE
VDSRPPWGGALPLPPAHRLRYLSPARRRFGGDATFKLQEPRGVRPSDWAPRAGLGGQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH