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Report for CCDS42665.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42665.1 Public Homo sapiens 2 AGBL5 24 110 108 CCDS HistoryNCBI Gene:60509Re-query CCDS DB by CCDS ID:42665.1Re-query CCDS DB by GeneID:60509See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42665.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000323064.12 ENSP00000323681.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000323064.12Link to Ensembl Protein Viewer:ENSP00000323681.8Re-query CCDS DB by Nucleotide ID:ENST00000323064Re-query CCDS DB by Protein ID:ENSP00000323681
Original member Current member NCBI NM_001035507.3 NP_001030584.1 Accepted alive Link to Nucleotide Sequence:NM_001035507.3Link to Protein Sequence:NP_001030584.1Re-query CCDS DB by Nucleotide ID:NM_001035507Re-query CCDS DB by Protein ID:NP_001030584Link to BLAST:NP_001030584.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001030584.1 717 Q8NDL9-3 717 100% 0 0

Chromosomal Locations for CCDS 42665.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27052959 27053173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27053402 27053573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27053896 27054059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27054630 27054807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27055075 27055253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27055682 27056138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27056623 27056792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27057303 27057438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27058400 27058602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27059190 27059469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2154 nt):
ATGGAGCTGCGCTGTGGGGGATTGCTGTTCAGTTCTCGCTTTGATTCAGGGAATCTAGCCCACGTGGAGA
AGGTGGAATCTTTGTCCAGTGATGGGGAAGGGGTAGGAGGTGGGGCGTCAGCCCTGACCAGTGGCATTGC
CTCTTCCCCTGACTATGAATTCAACGTGTGGACCCGACCAGACTGTGCTGAAACGGAATTTGAGAATGGG
AACAGGTCATGGTTCTACTTCAGCGTCCGGGGAGGAATGCCAGGAAAACTCATCAAGATCAACATTATGA
ACATGAACAAGCAGAGCAAGCTGTATTCCCAGGGCATGGCCCCCTTTGTGCGCACACTGCCCACCCGGCC
ACGCTGGGAACGCATTCGAGACCGGCCCACCTTTGAGATGACAGAGACGCAGTTTGTGTTATCCTTTGTT
CATCGTTTCGTGGAGGGCCGTGGGGCCACCACCTTCTTCGCCTTCTGCTACCCCTTCTCCTACAGTGACT
GCCAGGAACTGCTAAACCAGCTAGACCAGCGCTTTCCGGAGAACCACCCTACCCATAGCAGCCCCCTGGA
TACCATCTATTACCATCGGGAGCTCCTTTGCTATTCTCTGGATGGACTTCGTGTAGATCTGCTGACGATC
ACTTCCTGCCATGGGCTTCGAGAAGATCGAGAGCCCCGTCTAGAGCAGCTATTTCCTGATACCAGCACCC
CTCGACCATTCCGTTTCGCAGGCAAGAGGATATTCTTCTTAAGCAGTAGAGTACACCCAGGGGAGACTCC
ATCTAGCTTTGTCTTCAATGGCTTTCTGGACTTCATCCTCCGACCTGATGATCCCCGGGCCCAAACCCTC
CGTCGCCTCTTCGTCTTTAAGCTGATTCCCATGTTGAACCCCGATGGTGTGGTCCGGGGACACTACCGCA
CAGACTCACGTGGAGTGAATCTGAACCGTCAGTACCTGAAGCCTGATGCCGTCCTGCACCCGGCCATCTA
TGGGGCCAAAGCTGTGCTTCTCTACCACCATGTGCACTCTCGTCTGAACTCCCAGAGTTCCTCTGAGCAC
CAGCCCAGTTCCTGTCTCCCTCCTGATGCTCCTGTTTCTGACCTGGAGAAAGCCAACAATCTCCAAAATG
AAGCTCAGTGTGGGCACTCAGCTGACAGGCATAACGCTGAAGCCTGGAAACAAACAGAGCCAGCAGAACA
GAAGCTCAACAGTGTGTGGATTATGCCACAACAGTCTGCGGGGCTTGAAGAGTCAGCCCCTGATACCATC
CCCCCCAAAGAGAGTGGCGTTGCTTACTATGTGGACCTGCATGGACATGCTTCCAAAAGGGGCTGCTTCA
TGTACGGAAACAGCTTTAGTGATGAGAGCACCCAGGTGGAAAACATGCTATATCCAAAGCTCATCTCCTT
GAATTCAGCCCACTTCGACTTCCAGGGCTGCAATTTCTCAGAGAAGAATATGTATGCCCGAGACCGTAGA
GATGGCCAGTCTAAAGAGGGAAGCGGCCGTGTTGCAATCTACAAAGCCTCAGGGATAATCCACAGCTACA
CACTTGAATGCAACTACAACACTGGACGCTCAGTAAACAGCATCCCTGCTGCCTGCCATGACAATGGGCG
TGCCAGCCCCCCTCCCCCGCCGGCTTTCCCCTCCAGATACACTGTGGAACTATTTGAGCAGGTGGGACGA
GCTATGGCCATTGCAGCCCTGGACATGGCGGAATGTAATCCGTGGCCCCGAATTGTACTGTCAGAGCACA
GCAGCCTTACTAATCTACGGGCCTGGATGCTGAAACATGTACGCAACAGCCGAGGCCTAAGCAGCACTCT
GAATGTGGGTGTCAACAAGAAGAGGGGCCTTCGAACTCCACCCAAAAGTCACAATGGGTTGCCTGTCTCC
TGCTCCGAAAACACCTTGAGTCGGGCACGAAGTTTTAGCACCGGCACAAGTGCCGGTGGTAGCAGCAGCA
GCCAACAAAATTCTCCACAGATGAAGAATTCCCCCAGCTTTCCTTTTCATGGCAGTCGGCCTGCAGGGCT
GCCAGGCCTGGGCTCTAGTACCCAAAAGGTCACCCACCGGGTGCTGGGCCCCGTCAGAGGTAAGCCAGTC
TGGGAGCCCCTGCAACATGTGTTCGGTTGTCTGGGGCATTGCTGGGGGAAGTAA

Translation (717 aa):
MELRCGGLLFSSRFDSGNLAHVEKVESLSSDGEGVGGGASALTSGIASSPDYEFNVWTRPDCAETEFENG
NRSWFYFSVRGGMPGKLIKINIMNMNKQSKLYSQGMAPFVRTLPTRPRWERIRDRPTFEMTETQFVLSFV
HRFVEGRGATTFFAFCYPFSYSDCQELLNQLDQRFPENHPTHSSPLDTIYYHRELLCYSLDGLRVDLLTI
TSCHGLREDREPRLEQLFPDTSTPRPFRFAGKRIFFLSSRVHPGETPSSFVFNGFLDFILRPDDPRAQTL
RRLFVFKLIPMLNPDGVVRGHYRTDSRGVNLNRQYLKPDAVLHPAIYGAKAVLLYHHVHSRLNSQSSSEH
QPSSCLPPDAPVSDLEKANNLQNEAQCGHSADRHNAEAWKQTEPAEQKLNSVWIMPQQSAGLEESAPDTI
PPKESGVAYYVDLHGHASKRGCFMYGNSFSDESTQVENMLYPKLISLNSAHFDFQGCNFSEKNMYARDRR
DGQSKEGSGRVAIYKASGIIHSYTLECNYNTGRSVNSIPAACHDNGRASPPPPPAFPSRYTVELFEQVGR
AMAIAALDMAECNPWPRIVLSEHSSLTNLRAWMLKHVRNSRGLSSTLNVGVNKKRGLRTPPKSHNGLPVS
CSENTLSRARSFSTGTSAGGSSSSQQNSPQMKNSPSFPFHGSRPAGLPGLGSSTQKVTHRVLGPVRGKPV
WEPLQHVFGCLGHCWGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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