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Report for CCDS42784.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42784.1 Public Homo sapiens 2 IFT70B 24 110 108 CCDS HistoryNCBI Gene:150737Re-query CCDS DB by CCDS ID:42784.1Re-query CCDS DB by GeneID:150737See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42784.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000408939.4 ENSP00000386181.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000408939.4Link to Ensembl Protein Viewer:ENSP00000386181.2Re-query CCDS DB by Nucleotide ID:ENST00000408939Re-query CCDS DB by Protein ID:ENSP00000386181
Original member Current member NCBI NM_152517.3 NP_689730.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152517.3Link to Protein Sequence:NP_689730.2Re-query CCDS DB by Nucleotide ID:NM_152517Re-query CCDS DB by Protein ID:NP_689730Link to BLAST:NP_689730.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689730.2 665 Q8N4P2 665 100% 0 0

Chromosomal Locations for CCDS 42784.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 177550766 177552763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1998 nt):
ATGGCTGGCCTGAGCGGCGCGCAGATCCCCGACGGGGAGTTCACCGCGGTCGTGTACCGCCTCATCCGCA
ATGCACGCTACGCCGAGGCGGTGCAGCTGCTGGGCGGAGAACTGCAGCGGAGCCCTAGGAGCCGCGCCGG
CCTGTCGCTGCTAGGCTACTGCTACTACCGCCTGCAGGAGTTCGCGCTGGCGGCCGAGTGCTATGAGCAG
CTGGGCCAGCTGCACCCGGAACTGGAGCAGTACCGCCTGTACCAGGCCCAGGCCCTGTACAAGGCCTGCC
TTTATGCGGAGGCCACCCGGGTCGCCTTCCTTCTCCTGGATAACCCCGCCTACCACAGCCGGGTCCTCCG
CCTGCAAGCTGCTATCAAGTACAGCGAGGGCGATCTGCCAGGGTCCAGGAGCCTGGTAGAGCAGCTGCCG
AGTAGGGAAGGGGGAGAGGAAAGTGGGGGCGAGAATGAGACCGATGGCCAGATCAACCTGGGTTGTTTGC
TCTACAAGGAGGGACAGTATGAAGCTGCATGCTCCAAGTTTTTTGCCGCCCTGCAGGCCTCGGGCTACCA
GCCTGACCTTTCCTACAACCTGGCTTTGGCCTATTACAGCAGCCGACAGTATGCTTCAGCACTGAAGCAT
ATCGCTGAGATTATTGAGCGTGGCATCCGCCAGCACCCTGAGCTAGGTGTGGGCATGACCACTGAGGGCA
TTGATGTTCGCAGTGTTGGCAACACCTTAGTCCTCCATCAGACTGCTCTGGTGGAAGCCTTCAACCTTAA
GGCAGCTATAGAATACCAACTGAGAAACTATGAGGCAGCTCAAGAAGCCCTCACTGACATGCCACCCAGG
GCAGAGGAAGAGTTGGACCCTGTGACCCTACACAACCAGGCACTAATGAACATGGATGCCAGGCCTACAG
AAGGGTTTGAAAAGCTACAGTTTTTGCTCCAACAGAATCCCTTTCCTCCAGAGACTTTTGGCAACCTGTT
GCTGCTCTACTGTAAATATGAGTATTTTGACCTGGCAGCAGATGTCCTGGCAGAAAATGCCCATTTGATT
TATAAGTTCCTCACACCCTATCTCTATGACTTCTTGGACGCTGTGATCACTTGCCAGACAGCTCCTGAAG
AGGCTTTCATTAAGCTTGATGGGCTAGCAGGGATGCTGACTGAGGTCCTCCGGAAACTTACCATACAAGT
ACAGGAAGCAAGACACAATAGAGATGATGAAGCTATCAAAAAGGCAGTGAATGAATATGATGAAACCATG
GAGAAATACATTCCTGTGTTGATGGCTCAGGCAAAAATCTACTGGAATCTTGAAAATTATCCAATGGTGG
AAAAGATCTTCCGCAAATCTGTGGAATTCTGTAACGACCATGATGTGTGGAAGTTGAATGTGGCTCATGT
TCTGTTCATGCAGGAAAACAAATACAAAGAAGCCATTGGTTTCTATGAACCCATAGTCAAGAAGCATTAT
GATAACATCCTGAATGTCAGTGCTATTGTACTGGCTAATCTCTGTGTTTCCTATATTATGACAAGTCAAA
ATGAAGAAGCAGAGGAGTTGATGAGGAAGATTGAAAAGGAGGAAGAGCAGCTCTCTTATGATGACCCAGA
TAAGAAAATGTACCATCTCTGCATTGTGAATTTGGTGATAGGAACTCTTTATTGTGCCAAAGGAAATTAT
GACTTTGGTATTTCTCGAGTTATCAAAAGCTTGGAACCTTACAACAAAAAGCTGGGAACAGACACCTGGT
ATTATGCCAAAAGATGCTTCCTGTCCTTGTTAGAAAACATGTCAAAACACACAATCATGCTTCGTGATAG
TGTTATTCAAGAATGTGTCCAGTTTCTAGAACACTGTGAACTTCATGGCAGAAACATACCTGCTGTTATT
GAACAACCCCTGGAAGAAGAAAGAATGCATGTTGGAAAGAATACAGTCACATATGAGTCTAGGCAGTTAA
AAGCTTTGATTTATGAGATTATAGGATGGAATATATAG

Translation (665 aa):
MAGLSGAQIPDGEFTAVVYRLIRNARYAEAVQLLGGELQRSPRSRAGLSLLGYCYYRLQEFALAAECYEQ
LGQLHPELEQYRLYQAQALYKACLYAEATRVAFLLLDNPAYHSRVLRLQAAIKYSEGDLPGSRSLVEQLP
SREGGEESGGENETDGQINLGCLLYKEGQYEAACSKFFAALQASGYQPDLSYNLALAYYSSRQYASALKH
IAEIIERGIRQHPELGVGMTTEGIDVRSVGNTLVLHQTALVEAFNLKAAIEYQLRNYEAAQEALTDMPPR
AEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFGNLLLLYCKYEYFDLAADVLAENAHLI
YKFLTPYLYDFLDAVITCQTAPEEAFIKLDGLAGMLTEVLRKLTIQVQEARHNRDDEAIKKAVNEYDETM
EKYIPVLMAQAKIYWNLENYPMVEKIFRKSVEFCNDHDVWKLNVAHVLFMQENKYKEAIGFYEPIVKKHY
DNILNVSAIVLANLCVSYIMTSQNEEAEELMRKIEKEEEQLSYDDPDKKMYHLCIVNLVIGTLYCAKGNY
DFGISRVIKSLEPYNKKLGTDTWYYAKRCFLSLLENMSKHTIMLRDSVIQECVQFLEHCELHGRNIPAVI
EQPLEEERMHVGKNTVTYESRQLKALIYEIIGWNI


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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