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Report for CCDS42822.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
42822.1 |
Public |
Homo sapiens |
2 |
STK16 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:8576](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:42822.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:8576](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 2 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 42822.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000396738.7 |
ENSP00000379964.2 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000396738.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000379964.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000396738](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000379964](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000409638.7 |
ENSP00000386928.3 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000409638.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000386928.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000409638](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000386928](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001008910.4 |
NP_001008910.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001008910.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001008910.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001008910](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001008910](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001008910.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001330213.2 |
NP_001317142.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001330213.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001317142.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001330213](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001317142](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001317142.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 42822.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (918 nt): ATGGGCCACGCGCTGTGTGTCTGCTCTCGGGGAACTGTCATCATTGACAATAAGCGCTACCTCTTCATCC AGAAACTGGGGGAGGGTGGGTTCAGCTATGTGGACCTAGTGGAAGGGTTACATGATGGACACTTCTACGC CCTGAAGCGAATCCTGTGTCACGAGCAGCAGGACCGGGAGGAGGCCCAGCGAGAAGCCGACATGCATCGC CTCTTCAATCACCCCAACATCCTTCGCCTCGTGGCTTACTGTCTGAGGGAACGGGGTGCTAAGCATGAGG CCTGGCTGCTGCTACCATTCTTCAAGAGAGGTACGCTGTGGAATGAGATAGAAAGGCTGAAGGACAAAGG CAACTTCCTGACCGAGGATCAAATCCTTTGGCTGCTGCTGGGGATCTGCAGAGGCCTTGAGGCCATTCAT GCCAAGGGTTATGCCCACAGAGACTTGAAGCCCACCAATATATTGCTTGGAGATGAGGGGCAGCCAGTTT TAATGGACTTGGGTTCCATGAATCAAGCATGCATCCATGTGGAGGGCTCCCGCCAGGCTCTGACCCTGCA GGACTGGGCAGCCCAGCGGTGCACCATCTCCTACCGAGCCCCAGAGCTCTTCTCTGTGCAGAGTCACTGT GTCATCGATGAGCGGACTGATGTCTGGTCCCTAGGCTGCGTGCTATATGCCATGATGTTTGGGGAAGGCC CTTATGACATGGTGTTCCAAAAGGGTGACAGTGTGGCCCTTGCTGTGCAGAACCAACTCAGCATCCCACA AAGCCCCAGGCATTCTTCAGCATTGCGGCAGCTCCTGAACTCGATGATGACCGTGGACCCGCATCAGCGT CCTCACATTCCTCTCCTCCTCAGTCAGCTGGAGGCGCTTCAGCCCCCAGCTCCTGGCCAACATACTACCC AAATCTGA
Translation (305 aa): MGHALCVCSRGTVIIDNKRYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHR LFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHC VIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSSALRQLLNSMMTVDPHQR PHIPLLLSQLEALQPPAPGQHTTQI
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