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Report for CCDS42835.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42835.1 Public Homo sapiens 2 COPS8 24 110 108 CCDS HistoryNCBI Gene:10920Re-query CCDS DB by CCDS ID:42835.1Re-query CCDS DB by GeneID:10920See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42835.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392008.6 ENSP00000375865.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392008.6Link to Ensembl Protein Viewer:ENSP00000375865.2Re-query CCDS DB by Nucleotide ID:ENST00000392008Re-query CCDS DB by Protein ID:ENSP00000375865
Original member Current member NCBI NM_198189.3 NP_937832.1 Accepted alive Link to Nucleotide Sequence:NM_198189.3Link to Protein Sequence:NP_937832.1Re-query CCDS DB by Nucleotide ID:NM_198189Re-query CCDS DB by Protein ID:NP_937832Link to BLAST:NP_937832.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_937832.1 160 Q99627-2 160 100% 0 0

Chromosomal Locations for CCDS 42835.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 237087196 237087197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237088605 237088653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237089862 237089994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237094090 237094197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237095822 237095884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237096822 237096869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237097663 237097742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (483 nt):
ATGAATAATGCAAGATATCTTTGGAAAAGAATACCACCTGCTATAAAATCTGCAAATTCTGAACTTGGGG
GAATTTGGTCAGTAGGACAAAGAATCTGGCAGAGAGATTTCCCTGGGATCTATACAACCATCAACGCTCA
CCAGTGGTCTGAGACGGTCCAGCCAATTATGGAAGCACTTAGAGATGCAACAAGGAGACGCGCCTTTGCC
CTGGTCTCTCAAGCGTATACTTCAATCATCGCCGATGATTTTGCAGCCTTTGTTGGACTTCCTGTAGAAG
AGGCTGTGAAAGGCATATTAGAACAAGGATGGCAAGCTGATTCCACCACAAGAATGGTTCTGCCCAGAAA
GCCAGTTGCAGGGGCCCTGGATGTTTCCTTTAACAAGTTTATTCCCTTATCAGAGCCTGCTCCAGTTCCC
CCAATACCCAATGAACAGCAGTTAGCCAGACTGACGGATTATGTGGCTTTCCTTGAAAACTGA

Translation (160 aa):
MNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFA
LVSQAYTSIIADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFIPLSEPAPVP
PIPNEQQLARLTDYVAFLEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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