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Report for CCDS4286.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4286.1 Public Homo sapiens 5 SPINK1 24 110 108 CCDS HistoryNCBI Gene:6690Re-query CCDS DB by CCDS ID:4286.1Re-query CCDS DB by GeneID:6690See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4286.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296695.10 ENSP00000296695.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296695.10Link to Ensembl Protein Viewer:ENSP00000296695.5Re-query CCDS DB by Nucleotide ID:ENST00000296695Re-query CCDS DB by Protein ID:ENSP00000296695
Original member Current member NCBI NM_001354966.2 NP_001341895.1 Accepted alive Link to Nucleotide Sequence:NM_001354966.2Link to Protein Sequence:NP_001341895.1Re-query CCDS DB by Nucleotide ID:NM_001354966Re-query CCDS DB by Protein ID:NP_001341895Link to BLAST:NP_001341895.1
Original member Current member NCBI NM_001379610.1 NP_001366539.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001379610.1Link to Protein Sequence:NP_001366539.1Re-query CCDS DB by Nucleotide ID:NM_001379610Re-query CCDS DB by Protein ID:NP_001366539Link to BLAST:NP_001366539.1
Original member Current member NCBI NM_003122.5 NP_003113.2 Accepted alive Link to Nucleotide Sequence:NM_003122.5Link to Protein Sequence:NP_003113.2Re-query CCDS DB by Nucleotide ID:NM_003122Re-query CCDS DB by Protein ID:NP_003113Link to BLAST:NP_003113.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001341895.1 79 P00995 79 100% 0 0
NP_001366539.1 79 P00995 79 100% 0 0
NP_003113.2 79 P00995 79 100% 0 0

Chromosomal Locations for CCDS 4286.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 147824661 147824706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147828022 147828128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147829599 147829630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147831523 147831577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (240 nt):
ATGAAGGTAACAGGCATCTTTCTTCTCAGTGCCTTGGCCCTGTTGAGTCTATCTGGTAACACTGGAGCTG
ACTCCCTGGGAAGAGAGGCCAAATGTTACAATGAACTTAATGGATGCACCAAGATATATGACCCTGTCTG
TGGGACTGATGGAAATACTTATCCCAATGAATGCGTGTTATGTTTTGAAAATCGGAAACGCCAGACTTCT
ATCCTCATTCAAAAATCTGGGCCTTGCTGA

Translation (79 aa):
MKVTGIFLLSALALLSLSGNTGADSLGREAKCYNELNGCTKIYDPVCGTDGNTYPNECVLCFENRKRQTS
ILIQKSGPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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