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Report for CCDS42883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42883.1 Public Homo sapiens 20 SNX21 24 110 108 CCDS HistoryNCBI Gene:90203Re-query CCDS DB by CCDS ID:42883.1Re-query CCDS DB by GeneID:90203See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42883.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000462307.5 ENSP00000420169.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000462307.5Link to Ensembl Protein Viewer:ENSP00000420169.1Re-query CCDS DB by Nucleotide ID:ENST00000462307Re-query CCDS DB by Protein ID:ENSP00000420169
Original member Current member NCBI NM_001042633.3 NP_001036098.1 Accepted alive Link to Nucleotide Sequence:NM_001042633.3Link to Protein Sequence:NP_001036098.1Re-query CCDS DB by Nucleotide ID:NM_001042633Re-query CCDS DB by Protein ID:NP_001036098Link to BLAST:NP_001036098.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036098.1 158 Q969T3-3 158 100% 0 0

Chromosomal Locations for CCDS 42883.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 45833920 45833940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45834201 45834468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45834959 45835116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45840448 45840458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45840639 45840657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGCACCGTGGGACGCAGGAGGGTGCCATGGCCTCCCGGCTCCTGCACCGGCTGCGGCACGCCTTGGCCG
GCGACGGCCCCGGGGAGGCGGCGGCCAGTCCAGAGGCCGAGCAGTTTCCGGAGAGCTCAGAGCTGGAGGA
CGACGACGCCGAGGGCCTGTCCTCCCGACTCAGCGGCACCCTCAGCTTCACCAGCGCCGAGGACGACGAG
GACGACGAGGACGAGGACGACGAGGAGGCTGGCCCTGACCAGCTGCCCCTCGGGGATGGGACGTCAGGAG
AAGACGCAGAACGGAGCCCCCCACCTGATGGGCAGTGGGGCAGTCAGCTCCTGGCGCGGCAGCTGCAGGA
TTTCTGGAAGAAGTCCCGGAACACCTTGGCACCCCAGCGGCTGCTCTTCGAAGTGACCAGCGCTAACGTT
GTCAAGGACCCGCCCTCCAAGTACGTGACAAACCTCAGCTCTACACCCTCGCCGTGA

Translation (158 aa):
MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDE
DDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWKKSRNTLAPQRLLFEVTSANV
VKDPPSKYVTNLSSTPSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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