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Report for CCDS4289.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4289.1 Public Homo sapiens 5 SPINK7 24 110 108 CCDS HistoryNCBI Gene:84651Re-query CCDS DB by CCDS ID:4289.1Re-query CCDS DB by GeneID:84651See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4289.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274565.5 ENSP00000274565.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274565.5Link to Ensembl Protein Viewer:ENSP00000274565.4Re-query CCDS DB by Nucleotide ID:ENST00000274565Re-query CCDS DB by Protein ID:ENSP00000274565
Original member Current member NCBI NM_032566.3 NP_115955.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032566.3Link to Protein Sequence:NP_115955.1Re-query CCDS DB by Nucleotide ID:NM_032566Re-query CCDS DB by Protein ID:NP_115955Link to BLAST:NP_115955.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115955.1 85 P58062 85 100% 0 0

Chromosomal Locations for CCDS 4289.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 148312484 148312544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148313374 148313399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148314100 148314224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148315639 148315684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (258 nt):
ATGAAGATCACTGGGGGTCTCCTTCTGCTCTGTACAGTGGTCTATTTCTGTAGCAGCTCAGAAGCTGCTA
GTCTGTCTCCAAAAAAAGTGGACTGCAGCATTTACAAGAAGTATCCAGTGGTGGCCATCCCCTGCCCCAT
CACATACCTACCAGTTTGTGGTTCTGACTACATCACCTATGGGAATGAATGTCACTTGTGTACCGAGAGC
TTGAAAAGTAATGGAAGAGTTCAGTTTCTTCACGATGGAAGTTGCTAA

Translation (85 aa):
MKITGGLLLLCTVVYFCSSSEAASLSPKKVDCSIYKKYPVVAIPCPITYLPVCGSDYITYGNECHLCTES
LKSNGRVQFLHDGSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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