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Report for CCDS42893.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42893.1 Public Homo sapiens 20 PRELID3B 24 110 108 CCDS HistoryNCBI Gene:51012Re-query CCDS DB by CCDS ID:42893.1Re-query CCDS DB by GeneID:51012See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42893.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355937.9 ENSP00000348206.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355937.9Link to Ensembl Protein Viewer:ENSP00000348206.4Re-query CCDS DB by Nucleotide ID:ENST00000355937Re-query CCDS DB by Protein ID:ENSP00000348206
Original member Current member NCBI NM_016045.3 NP_057129.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016045.3Link to Protein Sequence:NP_057129.2Re-query CCDS DB by Nucleotide ID:NM_016045Re-query CCDS DB by Protein ID:NP_057129Link to BLAST:NP_057129.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057129.2 194 Q9Y3B1-1 194 100% 0 0

Chromosomal Locations for CCDS 42893.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 59035007 59035126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59036471 59036573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59036690 59036760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59037191 59037280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59038466 59038634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59042699 59042730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGAAGATCTGGACTTCGGAGCACGTCTTTGACCACCCGTGGGAAACTGTTACAACAGCTGCAATGCAGA
AATACCCAAACCCTATGAACCCAAGTGTGGTTGGAGTTGATGTGTTGGACAGACATATAGATCCCTCTGG
AAAGTTGCACAGCCACAGACTTCTCAGCACAGAGTGGGGACTGCCTTCCATTGTGAAGTCTCTTATTGGT
GCAGCAAGAACGAAAACATATGTGCAAGAACATTCTGTAGTTGATCCTGTAGAGAAAACAATGGAACTTA
AATCTACTAATATTTCATTTACAAACATGGTTTCAGTAGATGAGAGACTTATATACAAACCACATCCTCA
GGATCCAGAAAAAACTGTTTTGACACAAGAAGCCATAATTACCGTGAAAGGAGTTAGCCTCAGCAGTTAC
CTTGAAGGACTGATGGCAAGTACGATATCCTCAAATGCTAGTAAAGGCCGAGAAGCAATGGAATGGGTAA
TACATAAATTAAATGCTGAGATTGAAGAACTGACAGCCTCAGCAAGAGGAACCATAAGGACTCCAATGGC
AGCAGCAGCGTTTGCAGAGAAGTGA

Translation (194 aa):
MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPSVVGVDVLDRHIDPSGKLHSHRLLSTEWGLPSIVKSLIG
AARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPHPQDPEKTVLTQEAIITVKGVSLSSY
LEGLMASTISSNASKGREAMEWVIHKLNAEIEELTASARGTIRTPMAAAAFAEK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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