NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42917.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42917.1 Public Homo sapiens 21 KRTAP19-8 24 110 108 CCDS HistoryNCBI Gene:728299Re-query CCDS DB by CCDS ID:42917.1Re-query CCDS DB by GeneID:728299See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42917.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382822.2 ENSP00000372272.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382822.2Link to Ensembl Protein Viewer:ENSP00000372272.2Re-query CCDS DB by Nucleotide ID:ENST00000382822Re-query CCDS DB by Protein ID:ENSP00000372272
Original member Current member NCBI NM_001099219.1 NP_001092689.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099219.1Link to Protein Sequence:NP_001092689.1Re-query CCDS DB by Nucleotide ID:NM_001099219Re-query CCDS DB by Protein ID:NP_001092689Link to BLAST:NP_001092689.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092689.1 63 Q3LI54 63 100% 0 0

Chromosomal Locations for CCDS 42917.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 31038252 31038443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (192 nt):
ATGAGCTACTACAGAAGCTATTATGGAGGCCTGGGCTATGGCTATGGAGGCTTTGGTGGCTGGGGCTATG
GCTATGGCTGCGGCTATGGCAGCTTCCGCAGGTTGGGCTATGGCTGTGGCTACGGAGGCTATGGATTCAG
CTGTTGCCGACCATTATACTACGGAGGATATGGATTCTCTGCCTTCTACTGA

Translation (63 aa):
MSYYRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLYYGGYGFSAFY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH