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Report for CCDS43004.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43004.1 Public Homo sapiens 22 SFI1 24 110 108 CCDS HistoryNCBI Gene:9814Re-query CCDS DB by CCDS ID:43004.1Re-query CCDS DB by GeneID:9814See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43004.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400288.7 ENSP00000383145.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000400288.7Link to Ensembl Protein Viewer:ENSP00000383145.2Re-query CCDS DB by Nucleotide ID:ENST00000400288Re-query CCDS DB by Protein ID:ENSP00000383145
Original member Current member NCBI NM_001007467.3 NP_001007468.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001007467.3Link to Protein Sequence:NP_001007468.1Re-query CCDS DB by Nucleotide ID:NM_001007467Re-query CCDS DB by Protein ID:NP_001007468Link to BLAST:NP_001007468.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007468.1 1242 A8K8P3-1 1242 100% 0 0

Chromosomal Locations for CCDS 43004.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 31508285 31508376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31528690 31528863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31531058 31531129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31546861 31546971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31550254 31550348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31556942 31557059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31561290 31561392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31573058 31573214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31575231 31575392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31578382 31578452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31580272 31580364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31583875 31583972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31585068 31585134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31589447 31589577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31602212 31602293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31602607 31602785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31603744 31603819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31604309 31604404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31604869 31604945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31606328 31606430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31607937 31608033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31611143 31611303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31611766 31611840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31613142 31613216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31613354 31613530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31613602 31613855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31614789 31614860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31615048 31615279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31616745 31616877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31617000 31617078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31618115 31618226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31618314 31618418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3729 nt):
ATGAAGAATCTGCTCACTGAGAAGTGTATATCAAGCCACAATTTCCATCAAAAAGTGATTAAGCAGAGAA
TGGAGAAGAAGGTTGATTCCAGGTATTTTAAGGATGGTGCAGTTAAGAAACCTTATTCTGCAAAGACACT
GTCCAACAAGAAGTCTTCTGCATCCTTTGGGATCCGGAGGGAGTTACCTAGTACCAGTCATCTAGTGCAG
TATCGTGGCACACATACTTGTACCCGACAGGGCCGGTTAAGAGAACTGCGCATCAGATGCGTGGCCAGAA
AGTTCTTATATTTATGGATTCGAATGACTTTTGGAAGAGTATTTCCCTCTAAAGCCAGATTTTACTATGA
GCAGCGATTACTACGGAAGGTCTTCGAAGAATGGAAAGAGGAGTGGTGGGTTTTCCAGCACGAGTGGAAA
CTCTGTGTTCGAGCTGACTGTCACTACAGGTATTACCTGTACAACCTGATGTTCCAGACGTGGAAGACCT
ATGTGCGTCAGCAGCAGGAGATGAGGAACAAGTACATTAGAGCCGAGGTTCATGATGCAAAGCAAAAGAT
GCGACAGGCCTGGAAGTCCTGGTTGATCTACGTGGTTGTTCGTAGGACCAAACTTCAGATGCAGACTACA
GCTCTGGAGTTTAGGCAACGGATTATCTTACGGGTGTGGTGGAGCACGTGGAGGCAGCGACTAGGACAGG
TCCGTGTGAGCCGTGCCCTCCATGCCTCTGCTTTGAAGCACAGGGCCCTGAGCCTCCAGGTGCAGGCTTG
GTCACAGTGGCGGGAACAGCTCCTGTATGTCCAGAAGGAGAAACAAAAGGTTGTCTCTGCAGTGAAACAT
CATCAGCACTGGCAAAAACGGAGATTTCTAAAGGCCTGGCTTGAATACCTGCAAGTCCGCAGAGTGAAGA
GACAGCAGAATGAGATGGCTGAGCGATTCCATCATGTCACTGTGCTCCAGATATACTTCTGTGACTGGCA
GCAGGCCTGGGAGCGGAGGGAGAGCTTGTACGCTCACCATGCCCAGGTGGAGAAACTGGCCAGGAAGATG
GCCCTGCGGCGCGCCTTTACTCACTGGAAACACTACATGCTGCTGTGTGCAGAAGAAGCTGCCCAGTTTG
AGATGGCAGAAGAGCACCACAGGCACAGCCAGCTGTATTTTTGCTTTAGAGCCCTAAAAGACAATGTGAC
CCACGCTCATCTCCAGCAAATAAGAAGGAATCTTGCTCACCAGCAGCATGGTGTCACGCTGCTGCACAGG
TTCTGGAACCTCTGGCGGTCTCAGATTGAGCAGAAAAAGGAAAGAGAGCTGCTCCCCTTACTGCATGCTG
CCTGGGACCACTACAGAATAGCACTGCTGTGCAAATGTATCGAATTGTGGCTACAGTATACTCAGAAGAG
GCGGTACAAGCAGCTGCTACAGGCCAGAGCGGATGGTCATTTCCAGCAGAGAGCCCTGCCTGCTGCCTTC
CACACATGGAACAGACTCTGGCGATGGCGCCACCAGGAAAATGTCCTCAGTGCAAGAGCAACACGTTTCC
ACAGGGAGACATTAGAGAAGCAAGTATTTTCTCTCTGGAGGCAGAAGATGTTTCAGCATCGAGAAAACCG
CCTGGCAGAGAGAATGGCCATCCTTCACGCAGAGCGACAGCTTCTGTATAGGTCTTGGTTCATGTGGCAC
CAGCAGGCAGCAGCACGTCACCAGGAGCAGGAGTGGCAAACAGTGGCCTGTGCCCACCACCGCCACGGGC
GGCTCAAGAAAGCTTTCTGCCTCTGGAGGGAAAGTGCCCAAGGGCTCAGAACAGAGAGGACGGGCAGGGT
GCGGGCAGCAGAATTCCACATGGCCCAGCTCCTGCGTTGGGCCTGGAGCCAGTGGAGGGAGTGCCTGGCC
CTGCGGGGAGCGGAGCGGCAGAAGCTGATGCGAGCAGACCTGCACCACCAGCACAGCGTGCTGCACAGGG
CGCTGCAGGCATGGGTGACTTACCAGGGCAGGGTGCGAAGCATCCTCCGGGAGGTGGCAGCCAGGGAGAG
CCAGCACAACAGGCAGCTGCTGCGCGGGGCATTACGTCGCTGGAAAGAGAACACCATGGCCCGAGTGGAT
GAAGCCAAAAAAACCTTTCAAGCAAGTACTCATTACAGAAGGACCATATGTTCCAAGGTCCTGGTCCAGT
GGCGGGAAGCTGTGTCAGTGCAGATGTATTACCGACAGCAGGAGGACTGTGCCATCTGGGAGGCCCAGAA
GGTGCTGGACAGGGGCTGTCTGCGGACCTGGTTTCAGCGCTGGTGGGACTGCAGCCGGAGGTCAGCCCAG
CAGAGACTGCAGCTGGAGAGGGCAGTGCAACACCACCACCGGCAGCTGCTGCTGGAGGGGCTGGCCCGGT
GGAAGACGCACCATCTGCAGTGTGTCAGGAAGAGGCTCCTGCACAGGCAGAGCACCCAACTGCTGGCACA
GAGACTCAGCCGGACCTGCTTCCGCCAGTGGAGACAACAGCTGGCAGCCAGGAGGCAGGAGCAGCGGGCG
ACAGTGCGGGCCCTGTGGTTCTGGGCCTTCTCGCTGCAGGCAAAGGTGTGGGCCACGTGGCTGGCCTTTG
TACTGGAAAGGAGGAGAAAGAAGGCGCGGCTGCAGTGGGCGCTCCAGGCCTACCAGGGGCAGCTCCTCCA
GGAGGGTGCCACGCGGCTCCTGCGCTTTGCAGCCAGCATGAAGGCCTCCCGGCAGCAGCTGCAGGCCCAG
CAGCAGGTCCAGGCGGCTCACAGTCTCCATCGTGCCGTCCGCCGCTGTGCCACGCTCTGGAAACAGAAAG
TGCTGGGCCGGGGCGGGAAGCCTCAGCCCCTGGCAGCCATCGCACCCAGCAGGAAAGTGACGTTTGAGGG
TCCCCTTCTCAACCGCATTGCTGCTGGGGCTGGGGATGGCACCCTTGAGACCAAGAGGCCACAGGCTTCT
CGGCCTCTGGGAGCTCTGGGCCGCCTGGCTGCTGAGGAGCCCCACGCCCTGGAGCTCAACACTGCCCACT
CAGCGAGGAAGCAGCCGCGACGCCCACACTTCCTGTTGGAGCCTGCGCAGAGCCAGAGGCCTCAGAAGCC
ACAGGAACATGGCCTAGGCATGGCTCAGCCAGCAGCCCCCTCCCTGACGCGGCCCTTCCTGGCAGAGGCC
CCGACAGCACTGGTCCCACACAGCCCCCTGCCTGGGGCCCTGTCAAGCGCCCCTGGCCCGAAGCAGCCCC
CGACGGCAAGCACAGGCCCGGAGCTGCTGCTGCTGCCTCTTTCCTCCTTCATGCCCTGCGGGGCGGCTGC
ACCAGCCAGGGTGTCAGCACAGCGGGCTACTCCTAGGGATAAGCCCCCGGTCCCCTCATCCCTGGCCAGT
GTCCCTGACCCCCATCTACTCCTTCCTGGGGACTTCTCAGCCACCAGGGCTGGGCCTGGACTTTCAACTG
CAGGCAGCCTGGACCTTGAGGCTGAACTTGAGGAGATCCAGCAGCAACTACTGCACTACCAGACCACCAA
GCAGAACCTCTGGTCCTGTCGGCGGCAAGCGAGCAGCCTGCGCAGGTGGCTGGAGCTGAACAGAGAGGAG
CCGGGGCCTGAGGACCAGGAAGTAGAGCAGCAGGTGCAGAAAGAGCTGGAACAGGTGGAAATGCAGATCC
AGCTGCTGGCAGAGGAGCTCCAGGCTCAGCGCCAGCCCATTGGCGCCTGCGTTGCCCGCATCCAGGCCCT
GCGGCAGGCCCTGTGCTAG

Translation (1242 aa):
MKNLLTEKCISSHNFHQKVIKQRMEKKVDSRYFKDGAVKKPYSAKTLSNKKSSASFGIRRELPSTSHLVQ
YRGTHTCTRQGRLRELRIRCVARKFLYLWIRMTFGRVFPSKARFYYEQRLLRKVFEEWKEEWWVFQHEWK
LCVRADCHYRYYLYNLMFQTWKTYVRQQQEMRNKYIRAEVHDAKQKMRQAWKSWLIYVVVRRTKLQMQTT
ALEFRQRIILRVWWSTWRQRLGQVRVSRALHASALKHRALSLQVQAWSQWREQLLYVQKEKQKVVSAVKH
HQHWQKRRFLKAWLEYLQVRRVKRQQNEMAERFHHVTVLQIYFCDWQQAWERRESLYAHHAQVEKLARKM
ALRRAFTHWKHYMLLCAEEAAQFEMAEEHHRHSQLYFCFRALKDNVTHAHLQQIRRNLAHQQHGVTLLHR
FWNLWRSQIEQKKERELLPLLHAAWDHYRIALLCKCIELWLQYTQKRRYKQLLQARADGHFQQRALPAAF
HTWNRLWRWRHQENVLSARATRFHRETLEKQVFSLWRQKMFQHRENRLAERMAILHAERQLLYRSWFMWH
QQAAARHQEQEWQTVACAHHRHGRLKKAFCLWRESAQGLRTERTGRVRAAEFHMAQLLRWAWSQWRECLA
LRGAERQKLMRADLHHQHSVLHRALQAWVTYQGRVRSILREVAARESQHNRQLLRGALRRWKENTMARVD
EAKKTFQASTHYRRTICSKVLVQWREAVSVQMYYRQQEDCAIWEAQKVLDRGCLRTWFQRWWDCSRRSAQ
QRLQLERAVQHHHRQLLLEGLARWKTHHLQCVRKRLLHRQSTQLLAQRLSRTCFRQWRQQLAARRQEQRA
TVRALWFWAFSLQAKVWATWLAFVLERRRKKARLQWALQAYQGQLLQEGATRLLRFAASMKASRQQLQAQ
QQVQAAHSLHRAVRRCATLWKQKVLGRGGKPQPLAAIAPSRKVTFEGPLLNRIAAGAGDGTLETKRPQAS
RPLGALGRLAAEEPHALELNTAHSARKQPRRPHFLLEPAQSQRPQKPQEHGLGMAQPAAPSLTRPFLAEA
PTALVPHSPLPGALSSAPGPKQPPTASTGPELLLLPLSSFMPCGAAAPARVSAQRATPRDKPPVPSSLAS
VPDPHLLLPGDFSATRAGPGLSTAGSLDLEAELEEIQQQLLHYQTTKQNLWSCRRQASSLRRWLELNREE
PGPEDQEVEQQVQKELEQVEMQIQLLAEELQAQRQPIGACVARIQALRQALC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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