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Report for CCDS43054.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43054.1 Public Homo sapiens 3 CHCHD4 24 110 108 CCDS HistoryNCBI Gene:131474Re-query CCDS DB by CCDS ID:43054.1Re-query CCDS DB by GeneID:131474See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43054.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396914.4 ENSP00000380122.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396914.4Link to Ensembl Protein Viewer:ENSP00000380122.3Re-query CCDS DB by Nucleotide ID:ENST00000396914Re-query CCDS DB by Protein ID:ENSP00000380122
Original member Current member NCBI NM_001098502.2 NP_001091972.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098502.2Link to Protein Sequence:NP_001091972.1Re-query CCDS DB by Nucleotide ID:NM_001098502Re-query CCDS DB by Protein ID:NP_001091972Link to BLAST:NP_001091972.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091972.1 142 Q8N4Q1-1 142 100% 0 0

Chromosomal Locations for CCDS 43054.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 14112887 14113194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14116426 14116524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14124655 14124676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGTCCTATTGCCGGCAGGAAGGGAAGGATCGAATCATATTTGTAACCAAAGAAGATCATGAAACTCCAA
GC
AGTGCAGAATTGGTGGCTGATGACCCCAACGATCCATACGAGGAGCATGGATTGATACTGCCAAATGG
A
AACATTAACTGGAACTGCCCATGCCTTGGGGGAATGGCCAGCGGTCCCTGTGGAGAACAGTTTAAGTCA
GCC
TTTTCCTGCTTCCACTATAGCACGGAGGAGATCAAGGGGTCAGACTGTGTAGACCAGTTCCGGGCCA
TG
CAGGAATGCATGCAGAAATACCCAGACCTCTATCCCCAAGAGGATGAGGATGAGGAAGAGGAAAGAGA
G
AAGAAGCCAGCAGAACAAGCAGAAGAAACAGCTCCCATTGAGGCCACTGCAACCAAAGAAGAGGAGGGA
TCA
AGTTAA


Translation (142 aa):
MSYCRQEGKDRIIFVTKEDHETPSSAELVADDPNDPYEEHGLILPNGNINWNCPCLGGMASGPCGEQFKS
A
FSCFHYSTEEIKGSDCVDQFRAMQECMQKYPDLYPQEDEDEEEEREKKPAEQAEETAPIEATATKEEEG
S
S




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser