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Report for CCDS43073.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43073.1 Public Homo sapiens 3 HIGD1A 24 110 108 CCDS HistoryNCBI Gene:25994Re-query CCDS DB by CCDS ID:43073.1Re-query CCDS DB by GeneID:25994See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43073.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321331.12 ENSP00000319393.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000321331.12Link to Ensembl Protein Viewer:ENSP00000319393.7Re-query CCDS DB by Nucleotide ID:ENST00000321331Re-query CCDS DB by Protein ID:ENSP00000319393
Original member Current member EBI ENST00000418900.6 ENSP00000402160.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000418900.6Link to Ensembl Protein Viewer:ENSP00000402160.2Re-query CCDS DB by Nucleotide ID:ENST00000418900Re-query CCDS DB by Protein ID:ENSP00000402160
Original member Current member NCBI NM_001099669.2 NP_001093139.1 Accepted alive Link to Nucleotide Sequence:NM_001099669.2Link to Protein Sequence:NP_001093139.1Re-query CCDS DB by Nucleotide ID:NM_001099669Re-query CCDS DB by Protein ID:NP_001093139Link to BLAST:NP_001093139.1
Original member Current member NCBI NM_014056.4 NP_054775.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014056.4Link to Protein Sequence:NP_054775.2Re-query CCDS DB by Nucleotide ID:NM_014056Re-query CCDS DB by Protein ID:NP_054775Link to BLAST:NP_054775.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093139.1 93 Q9Y241-1 93 100% 0 0
NP_054775.2 93 Q9Y241-1 93 100% 0 0

Chromosomal Locations for CCDS 43073.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 42785271 42785320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42786028 42786162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42794157 42794253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (282 nt):
ATGTCAACAGACACAGGTGTTTCCCTTCCTTCATATGAGGAAGATCAGGGATCAAAACTCATTCGAAAAG
CTAAAGAGGCACCATTCGTACCCGTTGGAATAGCGGGTTTTGCAGCAATTGTTGCATATGGATTATATAA
ACTGAAGAGCAGGGGAAATACTAAAATGTCCATTCATCTGATCCACATGCGTGTGGCAGCCCAAGGCTTT
GTTGTAGGAGCAATGACTGTTGGTATGGGCTATTCCATGTATCGGGAATTCTGGGCAAAACCTAAGCCTT
AG

Translation (93 aa):
MSTDTGVSLPSYEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGF
VVGAMTVGMGYSMYREFWAKPKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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