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Report for CCDS4314.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4314.1 Public Homo sapiens 5 SLC36A3 24 110 108 CCDS HistoryNCBI Gene:285641Re-query CCDS DB by CCDS ID:4314.1Re-query CCDS DB by GeneID:285641See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4314.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335230.8 ENSP00000334750.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335230.8Link to Ensembl Protein Viewer:ENSP00000334750.3Re-query CCDS DB by Nucleotide ID:ENST00000335230Re-query CCDS DB by Protein ID:ENSP00000334750
Original member Current member NCBI NM_181774.4 NP_861439.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181774.4Link to Protein Sequence:NP_861439.3Re-query CCDS DB by Nucleotide ID:NM_181774Re-query CCDS DB by Protein ID:NP_861439Link to BLAST:NP_861439.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_861439.3 470 Q495N2-1 470 100% 0 0

Chromosomal Locations for CCDS 4314.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 151277393 151277661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151281014 151281183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151284044 151284210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151284613 151284711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151287246 151287464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151288386 151288470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151293364 151293459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151296180 151296268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151298593 151298683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151303227 151303354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGTCATTGCTTGGAAGGGACTACAACAGTGAGCTGAACTCCTTGGACAACGGACCTCAGTCACCCTCAG
AGAGCAGCAGTAGCATTACTTCAGAGAATGTCCATCCTGCTGGAGAAGCTGGACTATCGATGATGCAAAC
TTTGATCCACTTGTTGAAATGCAACATTGGCACAGGGCTCCTGGGGCTTCCCCTGGCCATAAAGAATGCC
GGCTTGTTGGTCGGTCCTGTCAGCCTTCTGGCCATCGGGGTCCTCACCGTGCACTGCATGGTCATCCTGT
TGAACTGTGCTCAACACCTCAGCCAGAGACTGCAGAAGACTTTTGTGAACTATGGAGAGGCCACGATGTA
CGGCCTTGAAACCTGCCCGAACACCTGGCTGAGGGCCCATGCAGTGTGGGGAAGGTACACTGTCAGCTTC
TTATTAGTCATCACCCAGCTGGGCTTCTGCAGTGTTTATTTTATGTTTATGGCAGACAATTTACAACAGA
TGGTGGAAAAAGCCCACGTGACCTCCAACATCTGCCAGCCCAGGGAGATTCTGACGCTGACCCCCATCCT
GGACATTCGTTTCTACATGCTGATAATCCTGCCCTTCCTGATCCTGTTGGTGTTTATCCAGAACCTCAAG
GTGCTGTCCGTCTTCTCGACATTGGCCAACATCACCACCCTTGGGAGCATGGCTCTGATCTTTGAGTATA
TCATGGAGGGGATTCCATATCCCAGCAACCTACCCTTGATGGCAAACTGGAAGACCTTCTTGCTGTTCTT
TGGTACAGCCATCTTCACATTTGAAGGCGTCGGTATGGTTCTGCCTCTCAAAAACCAGATGAAGCATCCA
CAGCAGTTTTCTTTTGTTCTGTACTTGGGGATGTCCATTGTCATCATCCTCTATATCTTACTGGGGACAC
TGGGCTACATGAAGTTTGGGTCAGACACCCAGGCCAGCATCACCCTCAACTTGCCCAATTGCTGGTTGTA
CCAGTCAGTCAAGCTGATGTACTCTATCGGCATCTTCTTCACCTATGCCCTCCAGTTCCACGTCCCAGCT
GAGATCATCATCCCGTTTGCCATCTCCCAAGTGTCAGAGAGCTGGGCACTGTTTGTAGACCTGTCTGTCC
GCTCAGCCTTGGTCTGTCTAACCTGTGTCTCAGCCATCCTCATCCCCCGCCTGGACTTGGTCATCTCCCT
GGTAGGCTCCGTGAGCAGCAGCGCCCTGGCTCTCATCATCCCAGCCCTCCTGGAGATCGTCATCTTTTAC
TCTGAGGACATGAGCTGTGTCACCATTGCCAAGGACATCATGATTAGCATCGTGGGCCTTTTAGGGTGTA
TATTTGGGACATACCAAGCCCTCTATGAGTTGCCCCAACCCATCAGCCATTCCATGGCCAACTCCACAGG
TGTCCATGCATAA

Translation (470 aa):
MSLLGRDYNSELNSLDNGPQSPSESSSSITSENVHPAGEAGLSMMQTLIHLLKCNIGTGLLGLPLAIKNA
GLLVGPVSLLAIGVLTVHCMVILLNCAQHLSQRLQKTFVNYGEATMYGLETCPNTWLRAHAVWGRYTVSF
LLVITQLGFCSVYFMFMADNLQQMVEKAHVTSNICQPREILTLTPILDIRFYMLIILPFLILLVFIQNLK
VLSVFSTLANITTLGSMALIFEYIMEGIPYPSNLPLMANWKTFLLFFGTAIFTFEGVGMVLPLKNQMKHP
QQFSFVLYLGMSIVIILYILLGTLGYMKFGSDTQASITLNLPNCWLYQSVKLMYSIGIFFTYALQFHVPA
EIIIPFAISQVSESWALFVDLSVRSALVCLTCVSAILIPRLDLVISLVGSVSSSALALIIPALLEIVIFY
SEDMSCVTIAKDIMISIVGLLGCIFGTYQALYELPQPISHSMANSTGVHA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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