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Report for CCDS43149.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43149.1 Public Homo sapiens 3 ISY1 24 110 108 CCDS HistoryNCBI Gene:57461Re-query CCDS DB by CCDS ID:43149.1Re-query CCDS DB by GeneID:57461See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43149.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393295.8 ENSP00000376973.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393295.8Link to Ensembl Protein Viewer:ENSP00000376973.4Re-query CCDS DB by Nucleotide ID:ENST00000393295Re-query CCDS DB by Protein ID:ENSP00000376973
Original member Current member NCBI NM_020701.4 NP_065752.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020701.4Link to Protein Sequence:NP_065752.1Re-query CCDS DB by Nucleotide ID:NM_020701Re-query CCDS DB by Protein ID:NP_065752Link to BLAST:NP_065752.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065752.1 285 Q9ULR0-3 285 100% 0 0

Chromosomal Locations for CCDS 43149.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 129130081 129130188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129130550 129130636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129134074 129134195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129134832 129134954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129140368 129140485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129145761 129145873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129156633 129156675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129156855 129156920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129158508 129158559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129159154 129159176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129160973 129160975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGGCCCGAAATGCAGAAAAGGCCATGACGGCCTTAGCAAGATTTCGCCAGGCTCAGCTGGAAGAGGGAA
AAGTGAAGGAACGAAGACCCTTTCTGGCCTCAGAATGTACTGAACTGCCTAAAGCTGAGAAGTGGAGACG
ACAGATCATTGGAGAGATCTCTAAAAAAGTGGCTCAGATTCAGAATGCTGGTTTAGGTGAATTTCGAATT
CGTGACCTGAATGATGAAATTAACAAGCTGCTAAGGGAGAAAGGACACTGGGAGGTCCGGATAAAGGAGC
TGGGAGGTCCTGATTATGGAAAAGTTGGCCCTAAAATGCTGGATCATGAAGGAAAAGAAGTCCCAGGAAA
CCGAGGTTACAAGTACTTTGGAGCAGCAAAAGATTTGCCTGGTGTTAGAGAGCTGTTTGAAAAAGAACCT
CTTCCTCCTCCCAGAAAGACACGTGCTGAGCTCATGAAGGCAATCGATTTTGAGTACTATGGTTACCTAG
ATGAAGATGATGGTGTTATTGTGCCTTTGGAACAGGAATATGAAAAGAAACTCAGAGCCGAGTTAGTGGA
AAAGTGGAAAGCAGAGAGAGAGGCTCGGCTGGCAAGAGGAGAAAAGGAAGAGGAGGAGGAAGAGGAGGAA
GAGATCAACATCTATGCAGTCACCGAGGAGGAGTCGGACGAGGAAGGCAGCCAGGAGAAAGGAGGGGACG
ACAGCCAGCAGAAGTTCATTGCTCACGTCCCTGTTCCCTCGCAGCAAGAGATTGAGGAGGCACTGGTGCG
AAGGAAGAAAATGGAACTCCTCCAGAAGTATGCAAGCGAGACCCTGCAGGCCCAAAGTGAAGAAGCCAGA
AGGCTCCTGGGGTATTAG

Translation (285 aa):
MARNAEKAMTALARFRQAQLEEGKVKERRPFLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRI
RDLNDEINKLLREKGHWEVRIKELGGPDYGKVGPKMLDHEGKEVPGNRGYKYFGAAKDLPGVRELFEKEP
LPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEE
EINIYAVTEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVRRKKMELLQKYASETLQAQSEEAR
RLLGY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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