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Report for CCDS43159.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43159.1 Public Homo sapiens 3 TFDP2 24 110 108 CCDS HistoryNCBI Gene:7029Re-query CCDS DB by CCDS ID:43159.1Re-query CCDS DB by GeneID:7029See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43159.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000467072.5 ENSP00000418590.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000467072.5Link to Ensembl Protein Viewer:ENSP00000418590.1Re-query CCDS DB by Nucleotide ID:ENST00000467072Re-query CCDS DB by Protein ID:ENSP00000418590
Original member Current member EBI ENST00000486111.5 ENSP00000420599.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000486111.5Link to Ensembl Protein Viewer:ENSP00000420599.1Re-query CCDS DB by Nucleotide ID:ENST00000486111Re-query CCDS DB by Protein ID:ENSP00000420599
Original member Current member NCBI NM_001178138.2 NP_001171609.1 Accepted alive Link to Nucleotide Sequence:NM_001178138.2Link to Protein Sequence:NP_001171609.1Re-query CCDS DB by Nucleotide ID:NM_001178138Re-query CCDS DB by Protein ID:NP_001171609Link to BLAST:NP_001171609.1
Original member Current member NCBI NM_001375776.1 NP_001362705.1 Accepted alive Link to Nucleotide Sequence:NM_001375776.1Link to Protein Sequence:NP_001362705.1Re-query CCDS DB by Nucleotide ID:NM_001375776Re-query CCDS DB by Protein ID:NP_001362705Link to BLAST:NP_001362705.1
Original member Current member NCBI NM_006286.5 NP_006277.1 Accepted alive Link to Nucleotide Sequence:NM_006286.5Link to Protein Sequence:NP_006277.1Re-query CCDS DB by Nucleotide ID:NM_006286Re-query CCDS DB by Protein ID:NP_006277Link to BLAST:NP_006277.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171609.1 386 Q14188-5 386 100% 0 0
NP_001362705.1 386 Q14188-5 386 100% 0 0
NP_006277.1 386 Q14188-5 386 100% 0 0

Chromosomal Locations for CCDS 43159.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 141952513 141952696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141952911 141953016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141959674 141959840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141963812 141963963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141970073 141970141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141974048 141974194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141978520 141978682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141993538 141993585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141995020 141995141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142005441 142005443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGATTATAAGCACACCACAGAGACTAACCAGTTCAGGAAGTGTTCTGATTGGGAGTCCATATACCCCTG
CACCAGCAATGGTTACTCAGACACACATAGCAGAAGCTACTGGCTGGGTCCCTGGTGATAGAAAACGGGC
TAGAAAATTTATAGACTCTGATTTTTCAGAAAGTAAACGAAGCAAAAAAGGAGATAAAAATGGGAAAGGC
TTGAGACACTTTTCAATGAAAGTGTGTGAGAAAGTTCAACGAAAAGGTACAACATCGTACAATGAAGTCG
CTGATGAGCTGGTGTCAGAGTTCACCAATTCAAATAACCATTTGGCTGCTGATTCGCAGGCTTATGATCA
GAAGAACATTAGGCGAAGAGTTTATGATGCTTTAAATGTGCTAATGGCAATGAACATAATTTCAAAGGAA
AAAAAAGAAATCAAGTGGATTGGCCTGCCTACCAATTCTGCTCAGGAATGTCAGAATCTGGAGATAGAGA
AGCAGAGGCGGATAGAACGGATAAAGCAGAAGCGGGCCCAGCTGCAAGAACTTCTCCTACAGCAAATCGC
TTTCAAAAACCTGGTACAGAGAAATCGACAAAATGAGCAGCAAAACCAGGGCCCGCCGGCTCTGAACTCT
ACCATTCAGCTGCCATTCATAATCATCAATACAAGCAGAAAAACAGTCATAGATTGCAGCATCTCCAGTG
ACAAGTTTGAGTATCTTTTCAATTTTGACAACACCTTTGAGATCCATGATGACATAGAAGTACTAAAGCG
GATGGGAATGTCGTTTGGCCTGGAGTCAGGCAAATGCTCTCTGGAGGATCTGAAACTTGCGAAATCCCTG
GTGCCAAAGGCTTTAGAAGGTTATATCACAGATATCTCCACAGGACCTTCTTGGTTAAATCAGGGACTAC
TTCTGAACTCTACCCAATCAGTTTCAAATTTAGACCTGACCACTGGTGCCACCTTACCCCAGTCAAGTGT
AAACCAAGGGTTATGCTTGGATGCAGAAGTGGCCTTAGCAACTGGGCAGTTCCTGGCCCCAAACAGTCAC
CAGTCCAGCAGTGCGGCCTCTCACTGCTCCGAGTCCCGAGGCGAGACCCCCTGTTCGTTCAATGATGAAG
ATGAGGAAGATGATGAGGAGGATTCCTCCTCCCCAGAATAA

Translation (386 aa):
MIISTPQRLTSSGSVLIGSPYTPAPAMVTQTHIAEATGWVPGDRKRARKFIDSDFSESKRSKKGDKNGKG
LRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSQAYDQKNIRRRVYDALNVLMAMNIISKE
KKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQKRAQLQELLLQQIAFKNLVQRNRQNEQQNQGPPALNS
TIQLPFIIINTSRKTVIDCSISSDKFEYLFNFDNTFEIHDDIEVLKRMGMSFGLESGKCSLEDLKLAKSL
VPKALEGYITDISTGPSWLNQGLLLNSTQSVSNLDLTTGATLPQSSVNQGLCLDAEVALATGQFLAPNSH
QSSSAASHCSESRGETPCSFNDEDEEDDEEDSSSPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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