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Report for CCDS43229.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43229.1 Public Homo sapiens 4 LRRC66 24 110 108 CCDS HistoryNCBI Gene:339977Re-query CCDS DB by CCDS ID:43229.1Re-query CCDS DB by GeneID:339977See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43229.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343457.3 ENSP00000341944.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000343457.3Link to Ensembl Protein Viewer:ENSP00000341944.3Re-query CCDS DB by Nucleotide ID:ENST00000343457Re-query CCDS DB by Protein ID:ENSP00000341944
Original member Current member EBI ENST00000682860.1 ENSP00000508002.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682860.1Link to Ensembl Protein Viewer:ENSP00000508002.1Re-query CCDS DB by Nucleotide ID:ENST00000682860Re-query CCDS DB by Protein ID:ENSP00000508002
Original member Current member NCBI NM_001024611.3 NP_001019782.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001024611.3Link to Protein Sequence:NP_001019782.1Re-query CCDS DB by Nucleotide ID:NM_001024611Re-query CCDS DB by Protein ID:NP_001019782Link to BLAST:NP_001019782.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019782.1 880 Q68CR7 880 100% 0 0

Chromosomal Locations for CCDS 43229.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 51994379 51996165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 51997748 51997937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52003223 52003392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52017118 52017613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2643 nt):
ATGAAAAACCTCTATTTCAGAGTCATTACCATAGTTATAGGTCTTTATTTTACTGGAATAATGACAAATG
CATCAAGAAAAAGCAATATTTTATTCAATTCTGAATGCCAATGGAATGAATATATTCTGACAAATTGTTC
TTTTACCGGAAAGTGTGATATACCTGTGGACATATCACAGACAGCAGCCACTGTGGATGTAAGTTTCAAT
TTCTTTAGAGTTCTCTTACAGTCTCACACGAAAAAAGAAGAGTGGAAAATAAAACATCTGGACCTCAGTA
ACAATCTCATATCAAAAATAACCTTAAGCCCTTTTGCATATTTACATGCTTTGGAAGTGTTAAACCTCAG
CAACAATGCCATCCACTCCCTCTCATTGGATCTACTCAGTCCTAAGTCCTCATGGGTGAAACGCCACAGA
AGCAGCTTCAGAAACAGGTTTCCATTGCTGAAGGTGCTCATTCTTCAAAGAAATAAACTCAGTGACACTC
CCAAGGGACTGTGGAAACTGAAGTCATTGCAGAGTTTGGATCTGTCATTCAATGGGATATTGCAAATAGG
GTGGTCTGATTTTCACAACTGCCTGCAACTGGAGAATCTCTGTTTAAAGAGCAACAAGATATTCAAAATT
CCCCCACAAGCCTTCAAGGACCTCAAAAAATTACAGGTCATAGACCTTAGCAACAATGCTCTGATTACCA
TCCTACCAATGATGATCATAGCTCTAGAATTTCCCCATCTAGTGGTTGACTTGGCTGATAATAACTGGCA
GTGTGATGATAGTGTGGCAGTCTTTCAAAATTTTATTTCTGAATCCTGGAGGAAAAAGTGGAATGTCATT
TGCAACAGGTCTATAGGGAGTGAGGAGGCCAACGGGGGCACTCCCCAGAGCAGGATTTCCAGGGAAACCC
GCCTTCCTCCCATTCATCTGCATCGCATGAAAAGCCTCATAAGGAGCAAAGCAGAGAGGCCCCAGGGAGG
AAGGCACACGGGCATTTCTACTCTGGGGAAGAAGGCAAAGGCCGGCTCTGGTCTCAGGAAGAAGCAGAGA
CGGCTGCCAAGGAGTGTTAGAAGCACCCGCGATGTGCAGGCTGCCGGCAAAAAAGAGGACGCTCCCCAGG
ACCTGGCTCTGGCGGTGTGCCTGTCAGTGTTCATCACATTCCTTGTCGCCTTCAGCCTGGGGGCTTTCAC
AAGGCCTTATGTTGACAGACTGTGGCAAAAAAAGTGCCAGAGCAAAAGCCCTGGCCTGGACAACGCGTAT
TCAAACGAGGGCTTCTACGATGACATGGAAGCTGCGGGGCACACACCACACCCAGAGACCCATCTGCGCC
AAGTATTTCCTCATCTAAGCCTCTACGAGAACCAGACCCCTTTCTGGGTGACACAGCCACACCCACACGC
CACCGTAATTCCTGATAGAACTCTGGGAAGGAGCAGAAAGGATCCTGGCAGTTCGCAGAGCCCAGGACAG
TGCGGGGACAACACCGGGGCAGGAAGTGGAAATGATGGTGCAGTCTATTCCATTCTCCAGAGACATCCAC
ATGCCGGTAACCGTGAACTAATGTCAGCAGCGCAGGACCACATCCATAGGAATGATATTCTCGGAGAATG
GACTTATGAAACTGTGGCCCAGGAAGAGCCTCTCAGTGCACATTCAGTGGGCGTCTCTTCTGTAGCTGGC
ACGTCTCACGCTGTCTCTGGCTCAAGCCGTTATGATTCCAATGAATTAGACCCTTCCCTCTCCGGAGAAA
TAACAGCTTCCCTCTGTAAAATGCTAACACATGCAGAAGCACAGAGGACTGGAGATAGTAAGGAAAGAGG
GGGCACTGAACAGTCACTTTGGGACTCGCAGATGGAATTTTCTAAGGAAAGGCAAGTGAGTTCATCCATT
GATTTGCTGAGCATACAGCAGCCAAGGCTGTCCGGGGCAAGGGCTGAGGAAGCGCTTTCAGCCCACTACA
GCGAGGTTCCATACGGTGACCCAAGAGACACAGGCCCATCAGTCTTTCCTCCAAGATGGGACAGTGGCCT
GGATGTCACTCCTGCTAACAAGGAACCAGTGCAGAAATCCACTCCTTCTGACACTTGCTGTGAGTTGGAG
AGTGACTGTGACTCTGATGAGGGGTCTCTGTTCACTCTGAGCTCCATAAGTTCAGAGAGTGCAAGGAGCA
AGACTGAAGAGGCAGTGCCTGATGAGGAGTCCCTGCAGGACGAGAGCTCAGGGGCAAGCAAGGACAATGT
GACGGCTGTAGACAGTCTTGAGGAAAATGTTACCTTCCAAACAATTCCAGGGAAATGCAAGAATCAAGAA
GATCCCTTTGAAAAACCTCTCATTTCTGCTCCAGACTCTGGCATGTACAAGACTCATCTGGAAAATGCCT
CTGACACTGATAGATCTGAGGGCCTGTCACCCTGGCCCAGGTCACCAGGGAATAGTCCCTTAGGGGATGA
GTTTCCGGGCATGTTCACTTATGATTATGACACAGCTCTTCAATCCAAGGCAGCAGAATGGCATTGCTCA
CTTAGAGACTTAGAATTTTCAAATGTGGACGTTTTACAGCAAACACCACCATGTTCTGCTGAAGTTCCCT
CAGATCCTGATAAGGCTGCCTTCCATGAAAGAGACTCAGACATTTTAAAATAA

Translation (880 aa):
MKNLYFRVITIVIGLYFTGIMTNASRKSNILFNSECQWNEYILTNCSFTGKCDIPVDISQTAATVDVSFN
FFRVLLQSHTKKEEWKIKHLDLSNNLISKITLSPFAYLHALEVLNLSNNAIHSLSLDLLSPKSSWVKRHR
SSFRNRFPLLKVLILQRNKLSDTPKGLWKLKSLQSLDLSFNGILQIGWSDFHNCLQLENLCLKSNKIFKI
PPQAFKDLKKLQVIDLSNNALITILPMMIIALEFPHLVVDLADNNWQCDDSVAVFQNFISESWRKKWNVI
CNRSIGSEEANGGTPQSRISRETRLPPIHLHRMKSLIRSKAERPQGGRHTGISTLGKKAKAGSGLRKKQR
RLPRSVRSTRDVQAAGKKEDAPQDLALAVCLSVFITFLVAFSLGAFTRPYVDRLWQKKCQSKSPGLDNAY
SNEGFYDDMEAAGHTPHPETHLRQVFPHLSLYENQTPFWVTQPHPHATVIPDRTLGRSRKDPGSSQSPGQ
CGDNTGAGSGNDGAVYSILQRHPHAGNRELMSAAQDHIHRNDILGEWTYETVAQEEPLSAHSVGVSSVAG
TSHAVSGSSRYDSNELDPSLSGEITASLCKMLTHAEAQRTGDSKERGGTEQSLWDSQMEFSKERQVSSSI
DLLSIQQPRLSGARAEEALSAHYSEVPYGDPRDTGPSVFPPRWDSGLDVTPANKEPVQKSTPSDTCCELE
SDCDSDEGSLFTLSSISSESARSKTEEAVPDEESLQDESSGASKDNVTAVDSLEENVTFQTIPGKCKNQE
DPFEKPLISAPDSGMYKTHLENASDTDRSEGLSPWPRSPGNSPLGDEFPGMFTYDYDTALQSKAAEWHCS
LRDLEFSNVDVLQQTPPCSAEVPSDPDKAAFHERDSDILK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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