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Report for CCDS43243.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43243.1 Public Homo sapiens 4 PRDM8 24 110 108 CCDS HistoryNCBI Gene:56978Re-query CCDS DB by CCDS ID:43243.1Re-query CCDS DB by GeneID:56978See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43243.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339711.8 ENSP00000339764.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000339711.8Link to Ensembl Protein Viewer:ENSP00000339764.4Re-query CCDS DB by Nucleotide ID:ENST00000339711Re-query CCDS DB by Protein ID:ENSP00000339764
Original member Current member EBI ENST00000415738.3 ENSP00000406998.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000415738.3Link to Ensembl Protein Viewer:ENSP00000406998.2Re-query CCDS DB by Nucleotide ID:ENST00000415738Re-query CCDS DB by Protein ID:ENSP00000406998
Original member Current member EBI ENST00000504452.5 ENSP00000423985.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000504452.5Link to Ensembl Protein Viewer:ENSP00000423985.1Re-query CCDS DB by Nucleotide ID:ENST00000504452Re-query CCDS DB by Protein ID:ENSP00000423985
Original member Current member NCBI NM_001099403.2 NP_001092873.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099403.2Link to Protein Sequence:NP_001092873.1Re-query CCDS DB by Nucleotide ID:NM_001099403Re-query CCDS DB by Protein ID:NP_001092873Link to BLAST:NP_001092873.1
Original member Current member NCBI NM_020226.4 NP_064611.3 Accepted alive Link to Nucleotide Sequence:NM_020226.4Link to Protein Sequence:NP_064611.3Re-query CCDS DB by Nucleotide ID:NM_020226Re-query CCDS DB by Protein ID:NP_064611Link to BLAST:NP_064611.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092873.1 689 Q9NQV8-1 689 100% 0 0
NP_064611.3 689 Q9NQV8-1 689 100% 0 0

Chromosomal Locations for CCDS 43243.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 80200081 80200299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 80201290 80201521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 80201914 80203532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2070 nt):
ATGGAGGATACTGGCATCCAGCGAGGCATCTGGGATGGAGATGCCAAGGCTGTCCAACAATGTCTGACAG
ATATTTTTACCAGCGTTTACACCACCTGCGACATCCCTGAGAATGCTATATTTGGTCCCTGTGTCCTGAG
CCATACTTCCCTATATGACAGCATAGCTTTCATAGCTCTCAAGTCTACTGACAAGAGAACAGTACCGTAT
ATCTTTCGGGTAGACACCTCAGCAGCAAATGGTTCCTCAGAAGGTCTCATGTGGCTGCGGTTGGTCCAAT
CGGCCAGAGATAAGGAAGAGCAGAACCTTGAAGCCTACATAAAAAACGGACAGCTGTTCTACCGCTCTCT
CCGCAGGATTGCCAAAGACGAGGAGTTACTAGTTTGGTACGGGAAAGAACTGACTGAGTTACTCTTGCTC
TGCCCCTCTAGATCCCACAACAAAATGAATGGGTCGTCCCCTTACACATGCCTGGAATGCAGCCAACGTT
TCCAGTTTGAGTTCCCCTATGTGGCGCATCTGCGTTTCCGCTGCCCCAAGAGACTTCACAGCGCTGATAT
AAGTCCCCAAGACGAACAAGGCGGCGGCGTGGGCACCAAGGACCACGGGGGCGGCGGCGGCGGTGGCAAA
GACCAGCAGCAGCAGCAGCAGGAGGCACCTTTAGGCCCGGGTCCCAAGTTTTGCAAAGCCGGCCCCCTCC
ACCACTACCCATCCCCCTCCCCGGAAAGCAGCAACCCATCCGCTGCCGCCGGCGGCAGCAGCGCGAAGCC
ATCCACAGACTTCCACAACCTGGCCAGGGAGCTGGAAAACTCCCGGGGAGGCAGCAGCTGCTCCCCAGCC
CAGAGCCTCAGCAGCGGTAGCGGCAGCGGCGGCGGCGGCGGCCACCAGGAGGCGGAGCTGAGTCCCGACG
GCATCGCCACGGGCGGCGGCAAAGGAAAGAGGAAATTCCCGGAGGAGGCGGCGGAGGGCGGCGGTGGCGC
TGGTCTGGTAGGGGGCCGGGGCCGCTTCGTAGAGCGGCCCCTCCCGGCCTCCAAGGAGGATCTGGTGTGC
ACACCGCAGCAGTACCGAGCCTCGGGCAGCTACTTCGGCCTGGAAGAGAACGGCCGCCTCTTCGCGCCGC
CAAGTCCCGAGACGGGCGAGGCGAAGCGCAGCGCCTTCGTGGAGGTGAAGAAGGCTGCCCGCGCGGCCAG
CCTGCAGGAGGAGGGGACAGCCGACGGCGCGGGAGTCGCCTCCGAGGACCAGGACGCTGGCGGCGGCGGC
GGCTCCTCCACGCCCGCGGCCGCGTCACCGGTGGGCGCCGAGAAGCTGCTGGCCCCGCGGCCTGGGGGCC
CGCTGCCCAGCCGGCTCGAGGGCGGCAGTCCTGCGAGGGGCAGCGCCTTCACTTCGGTGCCGCAGCTGGG
CAGCGCGGGCAGCACCAGCGGTGGGGGCGGAACGGGCGCCGGGGCCGCAGGCGGCGCGGGCGGGGGCCAG
GGCGCCGCGTCGGACGAGCGCAAAAGCGCCTTCTCGCAGCCAGCACGCTCTTTCTCGCAGCTGTCCCCGC
TGGTGCTGGGCCAGAAGCTGGGCGCGCTCGAGCCATGCCACCCCGCCGACGGCGTGGGCCCCACCAGACT
CTATCCCGCCGCCGCGGACCCTCTAGCGGTGAAGCTCCAGGGGGCCGCGGACCTGAACGGAGGTTGCGGG
TCCCTGCCGAGCGGCGGCGGCGGCCTGCCTAAGCAGAGCCCCTTCCTGTACGCCACCGCCTTCTGGCCCA
AGAGCTCCGCTGCCGCTGCAGCCGCGGCTGCGGCGGCGGCCGCGGGGCCCTTGCAGCTGCAGCTGCCCTC
GGCGCTCACGCTGCTGCCGCCCTCCTTCACCTCGCTGTGTCTGCCCGCGCAGAACTGGTGCGCCAAGTGC
AATGCCTCCTTCCGCATGACCTCCGACCTGGTGTACCATATGAGGTCGCACCACAAAAAGGAGTATGCGA
TGGAGCCCTTGGTGAAGCGGCGGCGAGAGGAGAAACTCAAGTGCCCCATCTGCAATGAGTCCTTCAGGGA
GCGCCACCACCTCTCCAGGCACATGACCTCGCATAATTGA

Translation (689 aa):
MEDTGIQRGIWDGDAKAVQQCLTDIFTSVYTTCDIPENAIFGPCVLSHTSLYDSIAFIALKSTDKRTVPY
IFRVDTSAANGSSEGLMWLRLVQSARDKEEQNLEAYIKNGQLFYRSLRRIAKDEELLVWYGKELTELLLL
CPSRSHNKMNGSSPYTCLECSQRFQFEFPYVAHLRFRCPKRLHSADISPQDEQGGGVGTKDHGGGGGGGK
DQQQQQQEAPLGPGPKFCKAGPLHHYPSPSPESSNPSAAAGGSSAKPSTDFHNLARELENSRGGSSCSPA
QSLSSGSGSGGGGGHQEAELSPDGIATGGGKGKRKFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVC
TPQQYRASGSYFGLEENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGG
GSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGAGAAGGAGGGQ
GAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPADGVGPTRLYPAAADPLAVKLQGAADLNGGCG
SLPSGGGGLPKQSPFLYATAFWPKSSAAAAAAAAAAAAGPLQLQLPSALTLLPPSFTSLCLPAQNWCAKC
NASFRMTSDLVYHMRSHHKKEYAMEPLVKRRREEKLKCPICNESFRERHHLSRHMTSHN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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