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Report for CCDS433.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
433.1 Public Homo sapiens 1 AKIRIN1 24 110 108 CCDS HistoryNCBI Gene:79647Re-query CCDS DB by CCDS ID:433.1Re-query CCDS DB by GeneID:79647See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 433.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000432648.8 ENSP00000392678.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000432648.8Link to Ensembl Protein Viewer:ENSP00000392678.3Re-query CCDS DB by Nucleotide ID:ENST00000432648Re-query CCDS DB by Protein ID:ENSP00000392678
Original member Current member NCBI NM_024595.3 NP_078871.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024595.3Link to Protein Sequence:NP_078871.1Re-query CCDS DB by Nucleotide ID:NM_024595Re-query CCDS DB by Protein ID:NP_078871Link to BLAST:NP_078871.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078871.1 192 Q9H9L7-1 192 100% 0 0

Chromosomal Locations for CCDS 433.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 38991381 38991600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38998171 38998311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39000972 39001106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39003347 39003418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39004045 39004055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGGCGTGCGGGGCGACGCTGAAGCGGCCCATGGAGTTCGAGGCGGCGCTGCTGAGCCCCGGCTCCCCGA
AGCGGCGGCGCTGCGCCCCTCTGCCCGGCCCCACTCCGGGCCTCAGGCCCCCGGACGCCGAGCCGCCGCC
GCCGTTTCAGACGCAGACCCCACCGCAGAGTCTGCAGCAGCCCGCCCCGCCCGGCAGCGAGCGGCGCCTT
CCAACTCCGGAGCAAATTTTTCAGAACATAAAACAAGAATATAGTCGTTATCAGAGGTGGAGACATTTAG
AAGTTGTTCTTAATCAGAGTGAAGCTTGTGCTTCGGAAAGTCAACCTCACTCCTCAGCACTCACAGCACC
TAGCTCTCCAGGTTCCTCATGGATGAAGAAGGACCAGCCCACATTTACCCTCCGACAAGTTGGCATAATA
TGTGAGCGCCTCTTAAAAGACTATGAAGATAAAATTCGGGAGGAGTATGAGCAAATCCTCAATACCAAAC
TAGCAGAACAATATGAATCTTTTGTGAAATTCACACATGATCAGATTATGCGACGGTATGGGACAAGGCC
AACAAGCTATGTGTCATGA

Translation (192 aa):
MACGATLKRPMEFEAALLSPGSPKRRRCAPLPGPTPGLRPPDAEPPPPFQTQTPPQSLQQPAPPGSERRL
PTPEQIFQNIKQEYSRYQRWRHLEVVLNQSEACASESQPHSSALTAPSSPGSSWMKKDQPTFTLRQVGII
CERLLKDYEDKIREEYEQILNTKLAEQYESFVKFTHDQIMRRYGTRPTSYVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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