NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43309.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43309.1 Public Homo sapiens 5 SPEF2 24 110 108 CCDS HistoryNCBI Gene:79925Re-query CCDS DB by CCDS ID:43309.1Re-query CCDS DB by GeneID:79925See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43309.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356031.8 ENSP00000348314.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356031.8Link to Ensembl Protein Viewer:ENSP00000348314.3Re-query CCDS DB by Nucleotide ID:ENST00000356031Re-query CCDS DB by Protein ID:ENSP00000348314
Original member Current member NCBI NM_024867.4 NP_079143.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024867.4Link to Protein Sequence:NP_079143.3Re-query CCDS DB by Nucleotide ID:NM_024867Re-query CCDS DB by Protein ID:NP_079143Link to BLAST:NP_079143.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079143.3 1822 Q9C093-1 1822 100% 0 0

Chromosomal Locations for CCDS 43309.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 35617998 35618055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35628460 35628562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35641431 35641683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35644355 35644525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35646667 35646807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35649361 35649425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35654540 35654726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35659019 35659207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35667072 35667259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35670059 35670227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35691037 35691256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35692570 35692724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35694288 35694363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35695735 35695796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35697690 35697793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35700496 35700752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35704554 35704662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35705651 35705808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35708948 35709121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35712812 35712886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35727675 35727823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35739919 35740046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35740129 35740267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35753624 35753761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35759568 35759719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35763522 35763702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35771609 35771756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35773893 35774021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35776257 35776395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35779117 35779346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35792340 35792446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35793159 35793341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35795703 35795795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35799968 35800147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35806707 35806952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35807131 35807253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35814464 35814553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5469 nt):
ATGTCGGAGATCCTGTGCCAGTGGCTCAACAAGGAGTTGAAGGTGTCCCGGACCGTGAGTCCCAAGTCAT
TTGCAAAGGCATTTTCCAGTGGCTATCTACTTGGAGAAGTTCTACACAAGTTTGAACTTCAGGATGATTT
TTCAGAATTTTTGGACAGCAGGGTTTCAAGTGCCAAACTTAATAATTTTTCTCGCTTGGAGCCAACACTT
AACCTTCTGGGTGTGCAGTTTGATCAGAATGTGGCCCATGGCATCATCACAGAAAAGCCTGGGGTGGCAA
CAAAGCTGTTATATCAATTGTACATTGCTCTTCAGAAAAAGAAGAAAAGTGGACTGACTGGAGTGGAGAT
GCAAACCATGCAACGTCTGACAAATTTAAGACTTCAAAACATGAAAAGTGATACTTTTCAAGAGAGACTT
AGACACATGATACCACGTCAAACTGATTTCAATCTGATGCGGATTACATACAGGTTTCAAGAAAAATATA
AACACGTGAAAGAAGATCTTGCCCATTTGCATTTTGAGAAACTTGAAAGATTTCAAAAACTCAAGGAAGA
GCAAAGATGTTTTGATATTGAAAAGCAATACTTAAACAGAAGACGACAAAATGAAATAATGGCCAAAATC
CAAGCAGCTATTATACAGATTCCTAAACCTGCATCAAATCGTACTTTGAAAGCACTCGAGGCCCAAAAAA
TGATGAAAAAGAAAAAAGAGGCAGAAGATGTGGCTGATGAAATTAAGAAGTTCGAAGCATTAATAAAAAA
GGATCTCCAAGCAAAAGAAAGTGCATCCAAGACTTCTTTAGATACAGCAGGCCAGACAACCACCGATTTG
TTAAATACTTACTCAGATGACGAGTACATTAAAAAAATCCAGAAGCGCCTTGAAGAAGATGCTTTTGCAC
GAGAGCAAAGGGAGAAAAGACGGCGGAAATTGTTAATGGACCAGTTAATAGCCCACGAAGCACAAGAGGA
GGCTTATCGGGAGGAACAGCTGATTAACCGGCTGATGCGGCAGTCCCAGCAGGAGCGCAGGATTGCCGTG
CAGCTCATGCATGTTCGGCATGAAAAGGAAGTTTTATGGCAAAACAGAATTTTCAGAGAAAAACAACATG
AGGAAAGACGACTTAAAGATTTCCAGGATGCTCTTGATCGAGAAGCGGCTTTGGCAAAACAAGCCAAGAT
TGACTTTGAAGAACAATTCCTTAAAGAAAAGAGATTTCATGATCAGATTGCTGTGGAAAGAGCTCAAGCT
CGTTATGAAAAGCATTATTCAGTATGTGCAGAAATTTTGGATCAAATAGTTGATTTGTCCACTAAAGTGG
CAGACTATCGAATGTTGACAAATAATCTGATTCCGTATAAGTTGATGCATGATTGGAAGGAACTATTTTT
TAATGCAAAACCCATATATGAACAAGCCTCTGTTAAGACACTACCTGCTAACCCCTCAAGAGAACAACTT
ACAGAACTGGAGAAAAGGGACTTGCTAGATACCAATGATTATGAAGAATATAAGAACATGGTTGGAGAGT
GGGCCTTACCAGAAGAAATGGTTGACAATTTACCACCCTCCAACAATTGCATACTGGGCCATATTCTTCA
CAGGCTAGCTGAAAAATCTCTTCCTCCTCGAGCGGAATCAACAACACCTGAATTACCTTCATTTGCTGTT
AAAGGATGCTTATTGGGGAAAACATTAAGTGGAAAAACTACCATTTTAAGGTCTCTACAAAAAGACTTTC
CTATACAGATACTTTCTATTGACACTCTTGTCCAAGAAGCTATCCAAGCATTTCATGACAATGAAAAAGT
CAGTGAGGTTCTACCAATTCAGAAAAATGATGAAGAAGATGCTCTACCAGTTCTGCAAGAGGAGATTAAA
GAAAGCCAGGATCCACAACATGTATTTTCAGCTGGTCCAGTTTCAGATGAAGTATTACCAGAAACAGAAG
GTGAAACAATGCTTAGTGCTAATGCTGATAAAACACCAAAAGCTGAAGAAGTCAAATCAAGTGATAGTTT
CTTAAAACTCACTACACGTGCTCAGCTTGGTGCAAAATCAGAACAGTTGCTGAAGAAAGGAAAGAGCATT
CCTGATGTGCTGCTTGTTGACATCATAGTAAATGCTATTAATGAGATACCTGTGAATCAAGACTGTATCC
TAGATGGTTTTCCAATGACTTTAAACCAAGCACAGCTTCTGGAAGAAGCTCTTACAGGCTGCAATAGAAA
CCTCACAGAAGTGGAAAGAAAAAAAGCACAAAAATCCACATTGGCTATTGATCCTGCGACTTCCAAAGAA
ATACCTCTTCCCTCTCCTGCATTTGATTTTGTCATATTATTAGATGTTTCAGATACTTCCTCAATGAGTC
GCATGAATGATATTATAGCTGAAGAATTGTCCTATAAAACTGCTCACGAAGATATCAGTCAACGTGTAGC
TGCTGAAAACCAAGATAAGGATGGAGACCAAAATTTAAGAGACCAGATACAACATAGAATTATAGGCTTC
TTGGACAACTGGCCTTTATTGGAGCAATGGTTTTCAGAGCCAGAAAATATTTTGATAAAAATCAATGCTG
AAATAGATAAGGAATCTTTATGTGAAAAAGTAAAAGAAATTCTTACGACTGAAATAGCAAAAAAAAAGAA
TAAAGTTGAGAAGAAATTAGAAGAAAAGGAAGCTGAGAAAAAAGCAGCAGCTTCCCTGGCTGAGCTTCCA
CTTCCTACACCTCCTCCTGCTCCTCCTCCTGAACCAGAAAAAGAGAAGGAAATTCATCAAAGCCATGTGG
CTTCAAAAACTCCTACTGCAAAAGGAAAACCTCAATCAGAAGCCCCGCATGGTAAGCAAGAATCTCTTCA
GGAAGGAAAAGGGAAGAAAGGTGAGACCGCACTCAAAAGAAAAGGTTCTCCTAAAGGAAAATCATCAGGA
GGAAAAGTACCAGTAAAGAAATCACCTGCTGACTCTACAGATACATCACCTGTTGCAATAGTGCCACAGC
CACCTAAGCCAGGATCAGAAGAATGGGTCTATGTGAATGAACCAGTTCCTGAGGAAATGCCTTTGTTTTT
AGTACCTTACTGGGAACTAATAGAAAATTCCTATATAAACACCATCAAAACAGTACTCAGGCATCTGAGG
GAAGACCAGCATACTGTGCTTGCTTACTTATATGAGATTAGAACAAGTTTCCAGGAGTTTCTAAAGCGTC
CGGATCACAAGCAAGATTTTGTAGCTCAATGGCAGGCTGATTTCAACTCCCTTCCTGATGACCTGTGGGA
TGATGAGGAAACAAAGGCTGAACTACATCAACGAGTGAATGATCTGCGAGACCGCCTGTGGGACATTTGT
GATGCCCGGAAGGAAGAGGCGGAGCAGGAGCGGCTTGACATCATTAATGAGAGCTGGTTACAGGACACTC
TTGGAATGACAATGAACCATTTCTTTTCCCTGATGCAGGCAGAGCTGAACCGTTTCCAAGATACAAAGAG
ACTCCTTCAAGATTATTACTGGGGAATGGAAAGTAAAATCCCAGTAGAGGACAACAAGAGATTTACTCGA
ATCCCTTTGGTCCAACTGGATAGTAAAGACAATTCTGAAAGCCAGCTTAGAATTCCTCTAGTTCCTCGAA
TATCCATTTCTCTGGAAACAGTTACACCCAAACCAAAAACAAAATCAGTACTGAAGGGCAAGATGGATAA
CTCCCTAGAAAACGTTGAGTCCAACTTTGAGGCCGATGAAAAGTTGGTCATGGACACCTGGCAGCAGGCT
TCTTTAGCAGTATCTCACATGGTGGCTGCTGAAATTCATCAGAGGCTTATGGAAGAAGAAAAAGAAAACC
AGCCAGCAGACCCCAAAGAAAAATCTCCTCAGATGGGTGCAAATAAAAAAGTCAAAAAGGAGCCACCCAA
GAAAAAACAGGAAGACAAAAAACCCAAAGGTAAATCACCACCTATGGCAGAAGCAACTCCTGTCATAGTA
ACAACAGAGGAAATTGCTGAAATCAAAAGGAAAAATGAACTGAGGGTCAAAATAAAAGAAGAACACCTTG
CTGCCTTGCAATTTGAAGAAATAGCCACGCAATTTCGACTTGAACTGATAAAGACAAAAGCATTGGCTCT
TCTTGAAGATTTAGTAACAAAGGTGGTTGATGTATATAAACTCATGGAAAAATGGCTTGGTGAGAGGTAT
TTGAATGAAATGGCCAGTACAGAAAAATTAACTGACGTAGCTCGCTATCACATTGAAACATCTACAAAAA
TTCAGAATGAACTTTATTTAAGCCAAGAAGACTTCTTCATTAATGGCAATATAAAAGTCTTCCCAGATCC
TCCCCCATCAATACGTCCTCCACCTGTAGAAAAGGAAGAAGATGGTACCCTGACCATTGAACAGCTTGAC
AGTCTTCGAGATCAGTTCTTAGATATGGCACCTAAAGGCATAATAGGAAATAAAGCATTTACTGACATTC
TGATCGATTTGGTGACCCTGAACCTTGGCACAAACAACTTTCCTAGTAATTGGATGCACCTTACCCAACC
TGAATTACAGGAATTAACATCTTTATTAACAGTCAACTCCGAGTTCGTGGACTGGCGGAAGTTCCTGTTA
GTAACCTCAATGCCTTGGCCCATTCCCTTGGAGGAGGAGCTCCTTGAGACCCTTCAGAAGTTCAAGGCTG
TGGATAAGGAGCAGTTGGGCACCATCACTTTTGAGCAGTATATGCAGGCTGGTCTGTGGTTTACAGGAGA
TGAAGATATAAAAATTCCAGAAAATCCTCTTGAACCCCTTCCATTTAATAGGCAGGAGCATCTTATAGAG
TTTTTCTTTAGGCTATTTGCTGACTATGAGAAGGATCCACCCCAGCTTGACTACACACAGATGCTGCTTT
ACTTTGCTTGCCACCCAGACACCGTGGAAGGAGTCTACAGGGCCCTCAGTGTGGCTGTTGGAACTCATGT
CTTCCAACAAGTCAAAGCTTCCATTCCAAGTGCAGAAAAGACCTCCTCAACTGATGCAGGTCCAGCTGAG
GAATTTCCTGAACCTGAGGAAAATGCTGCAAGAGAAGAAAGGAAATTAAAAGACGACACGGAGAAAAGGG
AACAGAAGGATGAAGAAATCCCTGAAAATGCAAACAATGAAAAGATGTCCATGGAAACACTACTCAAAGT
GTTCAAAGGGGGAAGTGAAGCACAGGACTCCAATAGATTTGCCAGCCACCTAAAGATAGAGAACATTTAT
GCAGAGGGCTTCATAAAAACATTTCAAGACCTAGGTGCCAAGAACCTGGAGCCAATTGAAGTCGCTGTTC
TCTTGAAGCATCCTTTTATTCAAGACCTGATTTCAAATTATTCAGACTATAAGTTTCCTGATATTAAAAT
AATTCTCCAAAGGAGTGAACATGTACAAGGAAGTGATGGAGAGAGATCACCTTCAAGACATACAGAGGAA
AAGAAATGA

Translation (1822 aa):
MSEILCQWLNKELKVSRTVSPKSFAKAFSSGYLLGEVLHKFELQDDFSEFLDSRVSSAKLNNFSRLEPTL
NLLGVQFDQNVAHGIITEKPGVATKLLYQLYIALQKKKKSGLTGVEMQTMQRLTNLRLQNMKSDTFQERL
RHMIPRQTDFNLMRITYRFQEKYKHVKEDLAHLHFEKLERFQKLKEEQRCFDIEKQYLNRRRQNEIMAKI
QAAIIQIPKPASNRTLKALEAQKMMKKKKEAEDVADEIKKFEALIKKDLQAKESASKTSLDTAGQTTTDL
LNTYSDDEYIKKIQKRLEEDAFAREQREKRRRKLLMDQLIAHEAQEEAYREEQLINRLMRQSQQERRIAV
QLMHVRHEKEVLWQNRIFREKQHEERRLKDFQDALDREAALAKQAKIDFEEQFLKEKRFHDQIAVERAQA
RYEKHYSVCAEILDQIVDLSTKVADYRMLTNNLIPYKLMHDWKELFFNAKPIYEQASVKTLPANPSREQL
TELEKRDLLDTNDYEEYKNMVGEWALPEEMVDNLPPSNNCILGHILHRLAEKSLPPRAESTTPELPSFAV
KGCLLGKTLSGKTTILRSLQKDFPIQILSIDTLVQEAIQAFHDNEKVSEVLPIQKNDEEDALPVLQEEIK
ESQDPQHVFSAGPVSDEVLPETEGETMLSANADKTPKAEEVKSSDSFLKLTTRAQLGAKSEQLLKKGKSI
PDVLLVDIIVNAINEIPVNQDCILDGFPMTLNQAQLLEEALTGCNRNLTEVERKKAQKSTLAIDPATSKE
IPLPSPAFDFVILLDVSDTSSMSRMNDIIAEELSYKTAHEDISQRVAAENQDKDGDQNLRDQIQHRIIGF
LDNWPLLEQWFSEPENILIKINAEIDKESLCEKVKEILTTEIAKKKNKVEKKLEEKEAEKKAAASLAELP
LPTPPPAPPPEPEKEKEIHQSHVASKTPTAKGKPQSEAPHGKQESLQEGKGKKGETALKRKGSPKGKSSG
GKVPVKKSPADSTDTSPVAIVPQPPKPGSEEWVYVNEPVPEEMPLFLVPYWELIENSYINTIKTVLRHLR
EDQHTVLAYLYEIRTSFQEFLKRPDHKQDFVAQWQADFNSLPDDLWDDEETKAELHQRVNDLRDRLWDIC
DARKEEAEQERLDIINESWLQDTLGMTMNHFFSLMQAELNRFQDTKRLLQDYYWGMESKIPVEDNKRFTR
IPLVQLDSKDNSESQLRIPLVPRISISLETVTPKPKTKSVLKGKMDNSLENVESNFEADEKLVMDTWQQA
SLAVSHMVAAEIHQRLMEEEKENQPADPKEKSPQMGANKKVKKEPPKKKQEDKKPKGKSPPMAEATPVIV
TTEEIAEIKRKNELRVKIKEEHLAALQFEEIATQFRLELIKTKALALLEDLVTKVVDVYKLMEKWLGERY
LNEMASTEKLTDVARYHIETSTKIQNELYLSQEDFFINGNIKVFPDPPPSIRPPPVEKEEDGTLTIEQLD
SLRDQFLDMAPKGIIGNKAFTDILIDLVTLNLGTNNFPSNWMHLTQPELQELTSLLTVNSEFVDWRKFLL
VTSMPWPIPLEEELLETLQKFKAVDKEQLGTITFEQYMQAGLWFTGDEDIKIPENPLEPLPFNRQEHLIE
FFFRLFADYEKDPPQLDYTQMLLYFACHPDTVEGVYRALSVAVGTHVFQQVKASIPSAEKTSSTDAGPAE
EFPEPEENAAREERKLKDDTEKREQKDEEIPENANNEKMSMETLLKVFKGGSEAQDSNRFASHLKIENIY
AEGFIKTFQDLGAKNLEPIEVAVLLKHPFIQDLISNYSDYKFPDIKIILQRSEHVQGSDGERSPSRHTEE
KK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH