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Report for CCDS43363.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43363.1 Public Homo sapiens 5 SEC24A 24 110 108 CCDS HistoryNCBI Gene:10802Re-query CCDS DB by CCDS ID:43363.1Re-query CCDS DB by GeneID:10802See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43363.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398844.7 ENSP00000381823.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398844.7Link to Ensembl Protein Viewer:ENSP00000381823.2Re-query CCDS DB by Nucleotide ID:ENST00000398844Re-query CCDS DB by Protein ID:ENSP00000381823
Original member Current member NCBI NM_021982.3 NP_068817.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021982.3Link to Protein Sequence:NP_068817.1Re-query CCDS DB by Nucleotide ID:NM_021982Re-query CCDS DB by Protein ID:NP_068817Link to BLAST:NP_068817.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068817.1 1093 O95486-1 1093 100% 0 0

Chromosomal Locations for CCDS 43363.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 134649077 134649173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134661119 134661586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134666823 134666996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134671809 134671886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134674615 134674775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134675045 134675217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134676023 134676125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134679602 134679728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134682373 134682482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134686790 134686902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134688181 134688299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134692602 134692657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134693727 134693933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134697126 134697246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134697899 134698057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134703759 134703932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134705327 134705437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134708713 134708888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134715024 134715161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134718069 134718173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134720998 134721090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134723567 134723670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134724980 134725094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3282 nt):
ATGTCCCAGCCGGGAATACCGGCCTCCGGCGGCGCCCCAGCCAGCCTCCAGGCCCAGAACGGAGCCGCCT
TGGCCTCGGGGTCTCCCTACACCAACGGTCCTGTCCAAAATGCATTGCTGTCTTCACAAGAGTCAGTGAG
CCAAGGATACAATTTCCAGCTTCCAGGATCCTACCCTCATCCAATACCAGCAAAGACTTTGAATCCAGTC
TCTGGACAGTCTAACTATGGTGGTTCTCAGGGATCTGGGCAGACTCTTAATAGACCACCTGTGGCCTCTA
ATCCAGTGACACCTTCGCTTCATAGTGGTCCTGCTCCCCGAATGCCATTACCTGCTTCTCAGAACCCAGC
TACTACACCAATGCCTTCTAGTAGCTTTCTTCCTGAAGCCAACCTGCCACCACCTTTGAATTGGCAATAT
AACTATCCATCCACAGCCTCACAAACAAACCATTGTCCTCGTGCATCATCCCAACCAACTGTATCTGGAA
ATACAAGTTTAACCACAAATCATCAATATGTTTCTTCTGGATATCCTTCACTTCAAAATAGCTTCATAAA
GTCAGGTCCTTCTGTACCTCCCTTAGTGAATCCACCTCTGCCTACAACTTTTCAACCAGGAGCTCCTCAT
GGGCCCCCTCCAGCTGGAGGCCCACCCCCAGTGAGGGCCCTCACGCCCCTGACATCATCATATAGAGATG
TACCCCAGCCCTTATTTAATTCAGCTGTCAACCAAGAAGGTATTACATCAAATACCAATAACGGATCTAT
GGTGGTCCACAGTAGTTACGACGAGATTGAAGGAGGTGGCTTATTGGCAACACCACAGCTTACTAACAAG
AATCCCAAAATGAGCCGAAGTGTTGGATATTCATATCCCTCCTTACCACCTGGTTATCAGAACACAACAC
CACCTGGTGCAACTGGAGTACCACCCTCTTCCTTGAATTACCCAAGTGGGCCACAAGCCTTTACTCAGAC
TCCCTTAGGTGCTAATCATTTAACCACAAGCATGAGTGGATTAAGTCTACAACCAGAGGGTCTAAGAGTT
GTCAATCTTCTTCAAGAAAGAAACATGCTTCCGTCAACACCTTTGAAGCCTCCAGTTCCAAATTTGCATG
AAGACATCCAGAAACTCAACTGTAACCCAGAGTTATTTCGATGCACGCTGACTAGCATTCCTCAGACGCA
GGCCTTATTGAATAAAGCCAAACTTCCTTTGGGGCTGCTGCTTCATCCTTTCAAAGACTTAGTGCAATTG
CCTGTGGTTACCTCCAGTACAATTGTGAGATGCCGTTCATGCAGGACGTACATCAATCCTTTCGTCAGCT
TTCTTGATCAAAGGAGATGGAAGTGTAACTTATGTTATCGAGTCAATGATGTTCCTGAAGAATTCTTGTA
CAACCCTTTGACCAGAGTTTATGGAGAACCTCACAGAAGACCAGAAGTTCAAAATGCTACTATTGAGTTT
ATGGCTCCTTCAGAATACATGTTACGACCACCTCAGCCTCCAGTGTATCTCTTTGTATTTGATGTGTCTC
ACAATGCAGTCGAAACTGGATACTTGAATTCAGTTTGCCAGAGTTTGTTAGACAATCTGGATTTGCTTCC
TGGCAACACTAGAACAAAAATTGGCTTCATAACATTTGACAGTACAATCCATTTCTACGGTCTTCAGGAA
AGTCTCTCTCAACCTCAGATGCTAATAGTTTCAGATATTGAAGATGTTTTTATACCTATGCCAGAGAACT
TATTAGTAAACTTAAATGAAAGTAAAGAGCTCGTGCAAGATTTACTGAAAACTTTGCCACAAATGTTTAC
CAAGACTCTGGAGACCCAGAGTGCCTTGGGTCCTGCACTGCAGGCTGCCTTTAAGCTGATGTCTCCAACT
GGTGGTCGAATGTCTGTCTTTCAAACACAACTCCCAACTCTTGGAGTGGGAGCCCTGAAACCACGAGAGG
AACCAAACCACAGGTCATCTGCTAAGGATATACACATGACACCATCCACTGACTTCTATAAGAAATTAGC
CTTGGACTGTTCTGGTCAGCAAGTTGCTGTTGACTTATTCCTTCTCAGTGGACAGTATTCTGATTTGGCT
TCTCTGGGTTGTATTTCTCGGTATTCAGCAGGTAGTGTCTATTACTATCCCTCTTACCATCATCAGCACA
ACCCAGTCCAAGTACAGAAATTACAGAAGGAACTACAGAGATACCTTACTCGGAAGATTGGCTTTGAGGC
AGTCATGAGGATTCGGTGCACCAAAGGTCTTTCCATTCATACTTTCCATGGAAACTTCTTTGTTAGGTCA
ACCGACTTACTGTCTTTGCCTAACGTCAACCCAGACGCTGGGTATGCAGTACAGATGTCAGTGGAAGAGA
GTCTTACTGACACTCAGTTGGTTTCTTTTCAGTCAGCACTCTTGTATACATCCAGCAAAGGCGAAAGAAG
AATTCGTGTTCATACTTTGTGTTTGCCAGTAGTTTCGACTCTGAATGATGTCTTTCTTGGAGCTGATGTT
CAAGCAATTTCAGGGTTATTGGCCAATATGGCTGTTGACAGATCTATGACTGCCAGTCTGAGTGACGCTC
GGGATGCTCTAGTGAATGCAGTCATTGACTCCCTTTCAGCTTACCGTTCTTCAGTCTTAAGTAACCAGCA
GCCTGGACTCATGGTTCCTTTTTCTTTGCGGCTTTTCCCACTTTTTGTGTTGGCTCTCCTTAAACAGAAA
TCATTCCAGACTGGGACAAATGCACGTCTAGATGAACGCATTTTTGCTATGTGTCAAGTGAAAAACCAGC
CCTTGGTTTACCTTATGCTCACAACTCATCCCAGTTTGTATAGAGTTGACAATCTCTCAGATGAGGGAGC
ACTCAACATCAGTGATAGAACCATACCTCAGCCCCCCATTCTTCAGCTTTCAGTGGAGAAGCTGAGCAGA
GATGGAGCTTTCCTCATGGATGCAGGCTCTGTACTGATGCTTTGGGTTGGAAAAAATTGTACACAGAATT
TTCTCAGCCAAGTTCTAGGAGTTCAAAACTATGCATCAATTCCACAGCCTATGACAGACCTTCCAGAACT
TGATACACCAGAATCTGCCAGAATAATAGCTTTCATCTCTTGGCTTAGAGAGCAGAGACCATTTTTCCCA
ATACTTTATGTAATAAGGGATGAGAGTCCAATGAAAGCAAACTTCCTTCAAAACATGATAGAAGACAGAA
CAGAATCTGCATTATCATATTATGAATTCCTGTTGCATATACAGCAACAAGTGAATAAATGA

Translation (1093 aa):
MSQPGIPASGGAPASLQAQNGAALASGSPYTNGPVQNALLSSQESVSQGYNFQLPGSYPHPIPAKTLNPV
SGQSNYGGSQGSGQTLNRPPVASNPVTPSLHSGPAPRMPLPASQNPATTPMPSSSFLPEANLPPPLNWQY
NYPSTASQTNHCPRASSQPTVSGNTSLTTNHQYVSSGYPSLQNSFIKSGPSVPPLVNPPLPTTFQPGAPH
GPPPAGGPPPVRALTPLTSSYRDVPQPLFNSAVNQEGITSNTNNGSMVVHSSYDEIEGGGLLATPQLTNK
NPKMSRSVGYSYPSLPPGYQNTTPPGATGVPPSSLNYPSGPQAFTQTPLGANHLTTSMSGLSLQPEGLRV
VNLLQERNMLPSTPLKPPVPNLHEDIQKLNCNPELFRCTLTSIPQTQALLNKAKLPLGLLLHPFKDLVQL
PVVTSSTIVRCRSCRTYINPFVSFLDQRRWKCNLCYRVNDVPEEFLYNPLTRVYGEPHRRPEVQNATIEF
MAPSEYMLRPPQPPVYLFVFDVSHNAVETGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFYGLQE
SLSQPQMLIVSDIEDVFIPMPENLLVNLNESKELVQDLLKTLPQMFTKTLETQSALGPALQAAFKLMSPT
GGRMSVFQTQLPTLGVGALKPREEPNHRSSAKDIHMTPSTDFYKKLALDCSGQQVAVDLFLLSGQYSDLA
SLGCISRYSAGSVYYYPSYHHQHNPVQVQKLQKELQRYLTRKIGFEAVMRIRCTKGLSIHTFHGNFFVRS
TDLLSLPNVNPDAGYAVQMSVEESLTDTQLVSFQSALLYTSSKGERRIRVHTLCLPVVSTLNDVFLGADV
QAISGLLANMAVDRSMTASLSDARDALVNAVIDSLSAYRSSVLSNQQPGLMVPFSLRLFPLFVLALLKQK
SFQTGTNARLDERIFAMCQVKNQPLVYLMLTTHPSLYRVDNLSDEGALNISDRTIPQPPILQLSVEKLSR
DGAFLMDAGSVLMLWVGKNCTQNFLSQVLGVQNYASIPQPMTDLPELDTPESARIIAFISWLREQRPFFP
ILYVIRDESPMKANFLQNMIEDRTESALSYYEFLLHIQQQVNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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