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Report for CCDS43364.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43364.1 Public Homo sapiens 5 PCBD2 24 110 108 CCDS HistoryNCBI Gene:84105Re-query CCDS DB by CCDS ID:43364.1Re-query CCDS DB by GeneID:84105See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43364.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000254908.11 ENSP00000254908.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000254908.11Link to Ensembl Protein Viewer:ENSP00000254908.6Re-query CCDS DB by Nucleotide ID:ENST00000254908Re-query CCDS DB by Protein ID:ENSP00000254908
Original member Current member EBI ENST00000512783.5 ENSP00000421544.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000512783.5Link to Ensembl Protein Viewer:ENSP00000421544.1Re-query CCDS DB by Nucleotide ID:ENST00000512783Re-query CCDS DB by Protein ID:ENSP00000421544
Original member Current member NCBI NM_032151.5 NP_115527.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032151.5Link to Protein Sequence:NP_115527.3Re-query CCDS DB by Nucleotide ID:NM_032151Re-query CCDS DB by Protein ID:NP_115527Link to BLAST:NP_115527.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115527.3 130 Q9H0N5 130 100% 0 0

Chromosomal Locations for CCDS 43364.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 134905140 134905223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134910335 134910466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134959040 134959120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134960586 134960681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (393 nt):
ATGGCGGCGGTGCTCGGGGCGCTCGGGGCGACGCGGCGCTTGTTGGCGGCGCTGCGAGGCCAGAGCCTAG
GGCTAGCGGCCATGTCATCAGGTACTCACAGGTTGACTGCAGAGGAGAGGAACCAAGCTATACTTGACCT
TAAAGCAGCAGGATGGTCGGAATTAAGTGAGAGAGATGCCATCTACAAAGAATTCTCCTTCCACAATTTT
AATCAGGCATTTGGCTTTATGTCCCGAGTTGCCCTACAAGCAGAGAAGATGAATCATCACCCAGAATGGT
TCAATGTATACAACAAGGTCCAGATAACTCTCACCTCACATGACTGTGGTGAACTGACCAAAAAAGATGT
GAAGCTGGCCAAGTTTATTGAAAAAGCAGCTGCTTCTGTGTGA

Translation (130 aa):
MAAVLGALGATRRLLAALRGQSLGLAAMSSGTHRLTAEERNQAILDLKAAGWSELSERDAIYKEFSFHNF
NQAFGFMSRVALQAEKMNHHPEWFNVYNKVQITLTSHDCGELTKKDVKLAKFIEKAAASV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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