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Report for CCDS43411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43411.1 Public Homo sapiens 5 GFPT2 24 110 108 CCDS HistoryNCBI Gene:9945Re-query CCDS DB by CCDS ID:43411.1Re-query CCDS DB by GeneID:9945See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43411.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253778.13 ENSP00000253778.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000253778.13Link to Ensembl Protein Viewer:ENSP00000253778.8Re-query CCDS DB by Nucleotide ID:ENST00000253778Re-query CCDS DB by Protein ID:ENSP00000253778
Original member Current member NCBI NM_005110.4 NP_005101.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005110.4Link to Protein Sequence:NP_005101.1Re-query CCDS DB by Nucleotide ID:NM_005110Re-query CCDS DB by Protein ID:NP_005101Link to BLAST:NP_005101.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005101.1 682 O94808 682 100% 0 0

Chromosomal Locations for CCDS 43411.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 180301564 180301608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180302423 180302584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180304772 180304939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180307176 180307303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180312430 180312544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180313807 180313964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180316341 180316461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180316764 180316861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180316963 180317058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180318793 180318956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180324188 180324305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180324816 180324895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180328277 180328338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180330700 180330834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180331495 180331553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180335828 180335953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180336479 180336577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180338493 180338600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180353211 180353217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2049 nt):
ATGTGCGGAATCTTTGCCTACATGAACTACAGAGTCCCCCGGACGAGGAAGGAGATCTTCGAAACCCTCA
TCAAGGGCCTGCAGCGGCTGGAGTACAGAGGCTACGACTCGGCAGGTGTGGCGATCGATGGGAATAATCA
CGAAGTCAAAGAAAGACACATTCAGCTGGTCAAGAAAAGGGGGAAAGTCAAGGCTCTCGATGAAGAACTT
TACAAACAAGACAGCATGGACTTAAAAGTGGAGTTTGAGACACACTTCGGCATTGCCCACACGCGCTGGG
CCACCCACGGGGTCCCCAGTGCTGTCAACAGCCACCCTCAGCGCTCAGACAAAGGCAACGAATTTGTTGT
CATCCACAATGGGATCATCACAAATTACAAAGATCTGAGGAAATTTCTGGAAAGCAAAGGCTACGAGTTT
GAGTCAGAAACAGATACAGAGACCATCGCCAAGCTGATTAAATATGTGTTCGACAACAGAGAAACTGAGG
ACATTACGTTTTCAACGTTGGTCGAGAGAGTCATTCAGCAGTTGGAAGGTGCATTCGCGCTGGTTTTCAA
GAGTGTCCACTACCCAGGAGAAGCCGTTGCCACACGGAGAGGCAGCCCCCTGCTCATCGGAGTCCGGAGC
AAATACAAGCTCTCCACAGAACAGATCCCTATCTTATACAGGACGTGCACTCTGGAGAATGTGAAGAATA
TCTGTAAGACACGGATGAAGAGGCTGGACAGCTCCGCCTGCCTGCATGCTGTGGGCGACAAGGCCGTGGA
ATTCTTCTTTGCTTCTGATGCAAGCGCTATCATAGAGCACACCAACCGGGTCATCTTCCTGGAGGACGAT
GACATCGCCGCAGTGGCTGATGGGAAACTCTCCATTCACCGGGTCAAGCGCTCGGCCAGTGATGACCCAT
CTCGAGCCATCCAGACCTTGCAGATGGAACTGCAGCAAATCATGAAAGGTAACTTCAGTGCGTTTATGCA
GAAGGAGATCTTCGAACAGCCAGAATCAGTTTTCAATACTATGAGAGGTCGGGTGAATTTTGAAACCAAC
ACAGTGCTCCTGGGTGGCTTGAAGGACCACTTGAAGGAGATTCGACGATGCCGACGGCTCATCGTGATTG
GCTGTGGAACCAGCTACCACGCTGCCGTGGCTACGCGGCAAGTTTTGGAGGAACTGACTGAGCTTCCTGT
GATGGTTGAACTTGCTAGTGATTTTCTGGACAGGAACACACCTGTGTTCAGGGATGACGTTTGCTTTTTC
ATCAGCCAGTCAGGCGAGACCGCGGACACCCTCCTGGCGCTGCGCTACTGTAAGGACCGCGGCGCTCTCA
CCGTGGGCGTCACCAACACCGTGGGCAGCTCCATCTCTCGCGAGACCGACTGCGGCGTCCACATCAACGC
AGGGCCGGAGATCGGCGTGGCCAGCACCAAGGCTTATACCAGTCAGTTCATCTCTCTGGTGATGTTTGGT
TTGATGATGTCTGAAGACCGAATTTCACTACAAAACAGGAGGCAAGAGATCATCCGTGGCTTGAGATCTT
TACCTGAGCTGATCAAGGAAGTGCTGTCTCTGGAGGAGAAGATCCACGACTTGGCCCTGGAGCTCTACAC
GCAGAGATCGCTGCTGGTGATGGGGCGGGGCTACAACTATGCCACCTGCCTGGAAGGAGCCCTGAAAATT
AAAGAGATAACCTACATGCACTCAGAAGGCATCCTGGCTGGGGAGCTGAAGCACGGGCCCCTGGCACTGA
TTGACAAGCAGATGCCCGTCATCATGGTCATTATGAAGGATCCTTGCTTCGCCAAATGCCAGAACGCCCT
GCAGCAAGTCACGGCCCGCCAGGGTCGCCCCATTATACTGTGCTCCAAGGACGATACTGAAAGTTCCAAG
TTTGCGTATAAGACAATTGAGCTGCCCCACACTGTGGACTGCCTCCAGGGCATCCTGAGCGTGATTCCGC
TGCAGCTGCTGTCCTTCCACCTGGCTGTTCTCCGAGGATATGACGTTGACTTCCCCAGAAATCTGGCCAA
GTCTGTAACTGTGGAATGA

Translation (682 aa):
MCGIFAYMNYRVPRTRKEIFETLIKGLQRLEYRGYDSAGVAIDGNNHEVKERHIQLVKKRGKVKALDEEL
YKQDSMDLKVEFETHFGIAHTRWATHGVPSAVNSHPQRSDKGNEFVVIHNGIITNYKDLRKFLESKGYEF
ESETDTETIAKLIKYVFDNRETEDITFSTLVERVIQQLEGAFALVFKSVHYPGEAVATRRGSPLLIGVRS
KYKLSTEQIPILYRTCTLENVKNICKTRMKRLDSSACLHAVGDKAVEFFFASDASAIIEHTNRVIFLEDD
DIAAVADGKLSIHRVKRSASDDPSRAIQTLQMELQQIMKGNFSAFMQKEIFEQPESVFNTMRGRVNFETN
TVLLGGLKDHLKEIRRCRRLIVIGCGTSYHAAVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFF
ISQSGETADTLLALRYCKDRGALTVGVTNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFISLVMFG
LMMSEDRISLQNRRQEIIRGLRSLPELIKEVLSLEEKIHDLALELYTQRSLLVMGRGYNYATCLEGALKI
KEITYMHSEGILAGELKHGPLALIDKQMPVIMVIMKDPCFAKCQNALQQVTARQGRPIILCSKDDTESSK
FAYKTIELPHTVDCLQGILSVIPLQLLSFHLAVLRGYDVDFPRNLAKSVTVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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