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Report for CCDS43414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43414.1 Public Homo sapiens 5 TRIM7 24 110 108 CCDS HistoryNCBI Gene:81786Re-query CCDS DB by CCDS ID:43414.1Re-query CCDS DB by GeneID:81786See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43414.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393319.7 ENSP00000376994.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393319.7Link to Ensembl Protein Viewer:ENSP00000376994.3Re-query CCDS DB by Nucleotide ID:ENST00000393319Re-query CCDS DB by Protein ID:ENSP00000376994
Original member Current member NCBI NM_203297.2 NP_976042.1 Accepted alive Link to Nucleotide Sequence:NM_203297.2Link to Protein Sequence:NP_976042.1Re-query CCDS DB by Nucleotide ID:NM_203297Re-query CCDS DB by Protein ID:NP_976042Link to BLAST:NP_976042.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_976042.1 329 Q9C029-4 329 100% 0 0

Chromosomal Locations for CCDS 43414.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 181195166 181195677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181198183 181198218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181198690 181198805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181199095 181199117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181199851 181200153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGACTCAGGCCACTGGCCAAATGTTATGTCTCCATGTTCAAGTCCCTCTCCAACTTCTCCTCCTGGGAC
AGAAACAGATGGCAGCGGAGCAGGAGAAGGTGGGGGCAGAGTTCCAGGCACTGAGGGCTTTCCTGGTGGA
GCAGGAGGGTCGGCTGCTAGGCCGCCTGGAGGAACTGTCCCGGGAGGTGGCACAGAAGCAGAATGAGAAC
CTGGCCCAGCTCGGGGTTGAGATCACCCAGCTGTCCAAGCTCAGCAGCCAGATCCAGGAGACAGCTCAAA
AGCCTGACCTTGACTTTCTCCAGGAATTCAAAAGCACGCTGAGCAGGTGTAGCAATGTGCCTGGCCCCAA
GCCAACCACAGTCTCTTCTGAGATGAAGAATAAAGTCTGGAATGTTTCTCTCAAGACCTTTGTCTTAAAA
GGGATGCTGAAGAAGTTCAAAGAGGACCTTCGGGGAGAGCTGGAGAAAGAGGAGAAAGTGGAGCTCACCT
TGGATCCCGACACGGCCAACCCGCGCCTCATCCTCTCTCTGGATCTTAAGGGCGTGCGCCTCGGCGAGCG
GGCCCAGGACCTGCCCAACCACCCCTGCCGCTTCGACACCAACACCCGCGTCCTGGCGTCCTGCGGCTTC
TCCTCGGGCCGGCATCACTGGGAGGTGGAGGTGGGCTCTAAGGACGGCTGGGCCTTTGGCGTGGCCCGCG
AGAGCGTGCGCCGAAAGGGCCTGACGCCCTTCACTCCCGAGGAGGGCGTCTGGGCCCTGCAGCTCAACGG
CGGCCAGTACTGGGCCGTGACCAGCCCCGAGCGGTCGCCCCTCAGCTGCGGGCACCTGTCGCGCGTGCGG
GTGGCCCTGGACCTGGAGGTGGGAGCCGTGTCCTTCTACGCTGTGGAGGACATGCGCCACCTCTACACCT
TCCGCGTCAACTTCCAGGAGCGCGTGTTCCCGCTTTTCTCTGTTTGCTCCACGGGCACCTACTTGCGAAT
CTGGCCTTGA

Translation (329 aa):
MTQATGQMLCLHVQVPLQLLLLGQKQMAAEQEKVGAEFQALRAFLVEQEGRLLGRLEELSREVAQKQNEN
LAQLGVEITQLSKLSSQIQETAQKPDLDFLQEFKSTLSRCSNVPGPKPTTVSSEMKNKVWNVSLKTFVLK
GMLKKFKEDLRGELEKEEKVELTLDPDTANPRLILSLDLKGVRLGERAQDLPNHPCRFDTNTRVLASCGF
SSGRHHWEVEVGSKDGWAFGVARESVRRKGLTPFTPEEGVWALQLNGGQYWAVTSPERSPLSCGHLSRVR
VALDLEVGAVSFYAVEDMRHLYTFRVNFQERVFPLFSVCSTGTYLRIWP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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