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Report for CCDS43425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43425.1 Public Homo sapiens 6 TMEM170B 24 110 108 CCDS HistoryNCBI Gene:100113407Re-query CCDS DB by CCDS ID:43425.1Re-query CCDS DB by GeneID:100113407See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43425.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379426.2 ENSP00000368737.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379426.2Link to Ensembl Protein Viewer:ENSP00000368737.1Re-query CCDS DB by Nucleotide ID:ENST00000379426Re-query CCDS DB by Protein ID:ENSP00000368737
Original member Current member NCBI NM_001100829.3 NP_001094299.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001100829.3Link to Protein Sequence:NP_001094299.1Re-query CCDS DB by Nucleotide ID:NM_001100829Re-query CCDS DB by Protein ID:NP_001094299Link to BLAST:NP_001094299.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094299.1 132 Q5T4T1 132 100% 0 0

Chromosomal Locations for CCDS 43425.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 11538278 11538374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 11565666 11565836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 11575431 11575561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (399 nt):
ATGAAGGCGGAGGGGGGCGACCACTCCATGATCAACCTGTCGGTGCAGCAGGTCCTGAGCCTCTGGGCCC
ACGGGACGGTGCTGAGGAACCTCACGGAGATGTGGTACTGGATCTTCCTCTGGGCTCTCTTCTCTTCTCT
GTTTGTCCATGGTGCTGCAGGAGTGTTGATGTTTGTGATGCTGCAGAGGCATAGGCAGGGAAGAGTCATC
TCTGTCATTGCAGTCAGCATTGGATTTCTGGCTTCTGTAACTGGAGCGATGATTACCAGTGCAGCAGTAG
CGGGCATTTACAGAGTAGCTGGGAAGAACATGGCCCCTTTGGAAGCGCTGGTATGGGGCGTTGGACAGAC
TGTACTGACATTAATCATCTCCTTTTCAAGGATCCTCGCTACACTTTGA

Translation (132 aa):
MKAEGGDHSMINLSVQQVLSLWAHGTVLRNLTEMWYWIFLWALFSSLFVHGAAGVLMFVMLQRHRQGRVI
SVIAVSIGFLASVTGAMITSAAVAGIYRVAGKNMAPLEALVWGVGQTVLTLIISFSRILATL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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