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Report for CCDS43504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43504.1 Public Homo sapiens 6 ECHDC1 24 110 108 CCDS HistoryNCBI Gene:55862Re-query CCDS DB by CCDS ID:43504.1Re-query CCDS DB by GeneID:55862See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43504.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000454859.8 ENSP00000401751.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000454859.8Link to Ensembl Protein Viewer:ENSP00000401751.3Re-query CCDS DB by Nucleotide ID:ENST00000454859Re-query CCDS DB by Protein ID:ENSP00000401751
Original member Current member EBI ENST00000430841.6 ENSP00000402492.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000430841.6Link to Ensembl Protein Viewer:ENSP00000402492.2Re-query CCDS DB by Nucleotide ID:ENST00000430841Re-query CCDS DB by Protein ID:ENSP00000402492
Original member Current member EBI ENST00000474289.6 ENSP00000434908.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000474289.6Link to Ensembl Protein Viewer:ENSP00000434908.1Re-query CCDS DB by Nucleotide ID:ENST00000474289Re-query CCDS DB by Protein ID:ENSP00000434908
Original member Current member NCBI NM_001002030.2 NP_001002030.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001002030.2Link to Protein Sequence:NP_001002030.1Re-query CCDS DB by Nucleotide ID:NM_001002030Re-query CCDS DB by Protein ID:NP_001002030Link to BLAST:NP_001002030.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002030.1 301 Q9NTX5-2 301 100% 0 0

Chromosomal Locations for CCDS 43504.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 127289869 127290277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127314816 127314896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127316450 127316502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127327002 127327144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127330809 127331028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGGCGAAAAGTCTTTTGAAGACAGCCTCTCTGTCTGGAAGGACAAAATTGCTACATCAAACAGGATTGT
CACTTTATAGTACATCCCATGGATTTTATGAGGAAGAAGTGAAAAAAACACTTCAGCAGTTTCCTGGTGG
ATCCATTGACCTTCAGAAGGAAGACAATGGCATTGGCATTCTTACTCTGAACAATCCAAGTAGAATGAAT
GCCTTTTCAGGTGTTATGATGCTACAACTTCTGGAAAAAGTAATTGAATTGGAAAATTGGACAGAGGGGA
AAGGCCTCATTGTCCGTGGGGCAAAAAATACTTTCTCTTCAGGATCTGATCTGAATGCTGTGAAATCACT
AGGAACTCCAGAGGATGGAATGGCCGTATGCATGTTCATGCAAAACACCTTAACAAGATTTATGAGACTT
CCTTTAATAAGTGTTGCGCTGGTTCAAGGTTGGGCATTGGGTGGAGGAGCAGAATTTACTACAGCATGTG
ATTTCAGGTTAATGACTCCAGAGAGTAAGATCAGATTCGTCCACAAAGAGATGGGCATAATACCAAGCTG
GGGTGGCACCACCCGGCTAGTTGAAATAATCGGAAGTAGACAAGCTCTCAAAGTGTTGAGTGGGGCCCTT
AAACTGGATTCAAAAAATGCTCTAAACATAGGAATGGTTGAAGAGGTCTTGCAGTCTTCAGATGAAACTA
AATCTCTAGAAGAGGCACAAGAATGGCTAAAGCAATTCATCCAAGGGCCACCGGAAGTAATTAGAGCTTT
GAAAAAATCTGTTTGTTCAGGCAGAGAGCTATATTTGGAGGAAGCATTACAGAACGAAAGAGATCTTTTA
GGAACAGTTTGGGGTGGGCCTGCAAATTTAGAGGCTATTGCTAAGAAAGGAAAATTTAATAAATAA

Translation (301 aa):
MAKSLLKTASLSGRTKLLHQTGLSLYSTSHGFYEEEVKKTLQQFPGGSIDLQKEDNGIGILTLNNPSRMN
AFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDLNAVKSLGTPEDGMAVCMFMQNTLTRFMRL
PLISVALVQGWALGGGAEFTTACDFRLMTPESKIRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGAL
KLDSKNALNIGMVEEVLQSSDETKSLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEALQNERDLL
GTVWGGPANLEAIAKKGKFNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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