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Report for CCDS43520.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43520.2 Public Homo sapiens 6 TMEM181 24 110 108 CCDS HistoryNCBI Gene:57583Re-query CCDS DB by CCDS ID:43520.2Re-query CCDS DB by GeneID:57583See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 43520.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367090.4 ENSP00000356057.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367090.4Link to Ensembl Protein Viewer:ENSP00000356057.4Re-query CCDS DB by Nucleotide ID:ENST00000367090Re-query CCDS DB by Protein ID:ENSP00000356057
Original member Current member NCBI NM_020823.2 NP_065874.2 Accepted alive Link to Nucleotide Sequence:NM_020823.2Link to Protein Sequence:NP_065874.2Re-query CCDS DB by Nucleotide ID:NM_020823Re-query CCDS DB by Protein ID:NP_065874Link to BLAST:NP_065874.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065874.2 516 Q9P2C4-1 516 100% 0 0

Chromosomal Locations for CCDS 43520.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 158536735 158536865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158573420 158573523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158580940 158580995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158583954 158584044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158585304 158585425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158589672 158589782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158605267 158605347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158607244 158607343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158608333 158608463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158608659 158608750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158623550 158623607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158625104 158625206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158625703 158625754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158628408 158628490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158629730 158629819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158631323 158631389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158631810 158631888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1551 nt):
ATGGACGCCGAGTACCCTGCCTTTGAGCCCCCGCTCTGCAGCGAGCTCAAGCACCTGTGCCGGCGGCTGC
GGGAAGCGTACCGCGAGCTCAAGGAGGACCTCACGCCCTTCAAGGATGACCGCTACTACAGGCTGGCGCC
CATGCGGCTCTACACGCTCTCCAAGCGCCACTTTGTCCTCGTGTTTGTCGTCTTCTTCATCTGCTTTGGC
CTGACCATCTTCGTTGGGATCAGAGGACCTAAAGTGATCCAGACTTCTGCGGCTAATTTTTCACTAAATA
ATAGCAAAAAGCTAAAGCCAATTCAAATACTTTCAAATCCACTGTCTACATACAATCAGCAACTATGGCT
GACATGTGTTGTTGAGTTGGATCAATCAAAAGAAACTTCTATTAAGACAAGCTTTCCCATGACTGTTAAA
GTCGATGGTGTAGCTCAAGATGGAACCACGATGTACATTCATAACAAAGTTCACAACCGGACAAGGACCC
TCACATGTGCAGGGAAATGTGCGGAGATTATTGTGGCTCACCTTGGCTACCTGAACTACACTCAGTATAC
AGTGATAGTGGGATTTGAACACCTGAAGCTCCCCATCAAGGGAATGAACTTCACATGGAAGACTTATAAC
CCTGCCTTCTCCCGGTTGGAAATCTGGTTCCGGTTTTTCTTTGTGGTGCTCACCTTCATCGTCACTTGCC
TGTTTGCGCATTCCCTCCGGAAATTTTCCATGAGAGACTGGGGCATCGAGCAGAAGTGGATGTCTGTTCT
CCTGCCTCTGCTGCTACTTTACAATGATCCGTTCTTCCCCCTCTCCTTCCTGGTCAACAGCTGGCTCCCA
GGGATGCTGGATGACCTCTTTCAGTCCATGTTCCTGTGCGCCCTGCTGCTCTTCTGGCTGTGCGTGTACC
ACGGGATTCGTGTCCAGGGAGAAAGAAAGTGTTTAACTTTCTATTTGCCTAAATTCTTCATTGTTGGACT
ATTGTGGTTGGCTTCTGTTACGCTAGGAATATGGCAAACAGTTAACGAATTACATGATCCAATGTACCAG
TATCGAGTTGATACCGGAAATTTTCAGGGAATGAAGGTCTTCTTCATGGTGGTGGCAGCGGTGTACATTC
TGTACCTCTTGTTCTTGATAGTGCGGGCGTGTTCCGAGCTACGTCACATGCCTTATGTGGATCTCAGGTT
GAAATTTTTGACTGCATTGACTTTCGTAGTACTTGTCATTAGCATCGCCATCCTTTATTTGAGATTTGGG
GCGCAAGTACTACAAGACAATTTTGTAGCAGAGCTGTCAACTCACTACCAGAATTCAGCCGAGTTCTTAT
CTTTCTATGGCCTGTTGAACTTCTATCTCTACACCTTGGCCTTTGTATATTCTCCATCGAAGAATGCCCT
CTATGAGTCCCAGCTGAAAGACAATCCTGCCTTCTCCATGCTGAATGACTCGGATGATGATGTGATTTAT
GGGAGTGACTATGAGGAAATGCCGCTGCAGAACGGCCAGGCCATCCGGGCCAAGTACAAGGAGGAGTCAG
ATAGTGACTGA

Translation (516 aa):
MDAEYPAFEPPLCSELKHLCRRLREAYRELKEDLTPFKDDRYYRLAPMRLYTLSKRHFVLVFVVFFICFG
LTIFVGIRGPKVIQTSAANFSLNNSKKLKPIQILSNPLSTYNQQLWLTCVVELDQSKETSIKTSFPMTVK
VDGVAQDGTTMYIHNKVHNRTRTLTCAGKCAEIIVAHLGYLNYTQYTVIVGFEHLKLPIKGMNFTWKTYN
PAFSRLEIWFRFFFVVLTFIVTCLFAHSLRKFSMRDWGIEQKWMSVLLPLLLLYNDPFFPLSFLVNSWLP
GMLDDLFQSMFLCALLLFWLCVYHGIRVQGERKCLTFYLPKFFIVGLLWLASVTLGIWQTVNELHDPMYQ
YRVDTGNFQGMKVFFMVVAAVYILYLLFLIVRACSELRHMPYVDLRLKFLTALTFVVLVISIAILYLRFG
AQVLQDNFVAELSTHYQNSAEFLSFYGLLNFYLYTLAFVYSPSKNALYESQLKDNPAFSMLNDSDDDVIY
GSDYEEMPLQNGQAIRAKYKEESDSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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