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Report for CCDS43533.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43533.1 Public Homo sapiens 7 SUN1 24 110 108 CCDS HistoryNCBI Gene:23353Re-query CCDS DB by CCDS ID:43533.1Re-query CCDS DB by GeneID:23353See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43533.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389574.7 ENSP00000374225.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000389574.7Link to Ensembl Protein Viewer:ENSP00000374225.3Re-query CCDS DB by Nucleotide ID:ENST00000389574Re-query CCDS DB by Protein ID:ENSP00000374225
Original member Current member EBI ENST00000425407.6 ENSP00000392309.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000425407.6Link to Ensembl Protein Viewer:ENSP00000392309.2Re-query CCDS DB by Nucleotide ID:ENST00000425407Re-query CCDS DB by Protein ID:ENSP00000392309
Original member Current member NCBI NM_025154.6 NP_079430.3 Accepted alive Link to Nucleotide Sequence:NM_025154.6Link to Protein Sequence:NP_079430.3Re-query CCDS DB by Nucleotide ID:NM_025154Re-query CCDS DB by Protein ID:NP_079430Link to BLAST:NP_079430.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079430.3 702 O94901-5 702 100% 0 0

Chromosomal Locations for CCDS 43533.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 838871 838986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 841946 842130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 843206 843232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 843341 843520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 851950 852043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 852609 852667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 852810 852952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 853409 853618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 854920 855006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 856358 856401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 857828 857957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 860128 860382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 861380 861464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 865952 866067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 869349 869516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 872470 872562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 873215 873331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2109 nt):
ATGTCCCGCCGTAGTTTGCGCCTGGCCACGACAGCATGCACCCTGGGGGATGGTGAGGCTGTGGGTGCCG
ACAGCGGCACCAGCAGCGCTGTCTCCCTGAAGAACCGAGCGGCCAGAACAACAAAACAGCGCAGAAGCAC
AAACAAATCAGCTTTTAGTATCAACCACGTGTCAAGGCAGGTCACGTCCTCTGGCGTCAGCCACGGCGGC
ACTGTCAGCCTGCAGGATGCTGTGACTCGACGGCCTCCTGTATTGGACGAGTCTTGGATTCGTGAACAGA
CCACAGTGGACCACTTCTGGGGTCTTGATGATGATGGTGATCTTAAAGGTGGAAATAAAGCTGCCATTCA
GGGAAACGGGGATGTGGGAGCCGCCGCCGCCACCGCGCACAACGGCTTCTCCTGCAGCAACTGCAGCATG
CTGTCCGAGCGCAAGGACGTGCTCACGGCGCACCCCGCGGCCCCCGGGCCCGTGTCGAGAGTTTATTCTA
GGGACAGGAATCAAAAATGGAAGGCAGCCTCTGGAGTGTTCTGGTGGCTGGGGATTGGATGGTACCAGTT
TGTTACTTTGATTTCTTGGCTGAATGTGTTTCTTCTTACCAGGTGCCTTCGAAACATCTGCAAGTTTTTA
GTCTTGCTCATCCCACTCTTCCTTTTACTAGCAGGTCTCTCCTTACGGGGCCAGGGCAATTTCTTTTCGT
TCTTGCCCGTGTTGAACTGGGCAAGCATGCATAGAACACAGCGGGTGGATGACCCCCAGGACGTGTTTAA
ACCCACGACTTCTCGCCTGAAGCAGCCTCTGCAGGGTGACAGTGAGGCTTTTCCGTGGCATTGGATGAGT
GGCGTGGAGCAGCAGGTGGCCTCTCTGTCTGGACAGTGCCACCACCATGGTGAGAATCTCCGAGAGCTGA
CCACTTTGCTACAGAAGCTGCAGGCTCGGGTGGACCAGATGGAAGGCGGCGCTGCCGGGCCGTCAGCTTC
GGTCAGAGACGCTGTGGGACAGCCCCCGAGGGAGACTGACTTTATGGCCTTTCACCAAGAACATGAAGTG
CGTATGTCACACTTGGAAGATATTCTGGGAAAACTGAGAGAAAAATCTGAGGCCATCCAGAAGGAACTAG
AACAGACCAAGCAAAAAACAATCAGTGCGGTTGGTGAGCAGCTCCTGCCCACAGTCGAGCACCTCCAGCT
GGAGCTGGATCAGCTAAAGTCAGAGCTGTCCAGCTGGCGACACGTGAAGACCGGCTGTGAGACAGTGGAT
GCCGTACAAGAAAGAGTGGACGTGCAAGTCAGAGAAATGGTGAAACTCCTGTTTTCCGAAGATCAGCAAG
GCGGTTCTCTGGAACAGCTGCTGCAGAGGTTCTCATCACAGTTTGTGAGCAAAGGCGACTTGCAGACGAT
GCTGCGAGACCTGCAGCTGCAGATCCTGCGGAACGTCACCCACCACGTTTCCGTGACCAAGCAGCTCCCA
ACCTCAGAAGCCGTGGTGTCTGCTGTGAGCGAGGCGGGGGCGTCTGGAATAACAGAGGCGCAAGCACGTG
CCATCGTGAACAGCGCCTTGAAGCTGTATTCCCAAGATAAGACCGGGATGGTGGACTTTGCTCTGGAATC
TGGTGGTGGCAGCATCTTGAGTACTCGCTGTTCTGAAACTTACGAAACCAAAACGGCGCTGATGAGTCTG
TTTGGGATCCCGCTGTGGTACTTCTCGCAGTCCCCGCGCGTGGTCATCCAGCCTGACATTTACCCCGGTA
ACTGCTGGGCATTTAAAGGCTCCCAGGGGTACCTGGTGGTGAGGCTCTCCATGATGATCCACCCAGCCGC
CTTCACTCTGGAGCACATCCCTAAGACGCTGTCGCCAACAGGCAACATCAGCAGCGCCCCCAAGGACTTC
GCCGTCTATGGATTAGAAAATGAGTATCAGGAAGAAGGGCAGCTTCTGGGACAGTTCACGTATGATCAGG
ATGGGGAGTCGCTCCAGATGTTCCAGGCCCTGAAAAGACCCGACGACACAGCTTTCCAAATAGTGGAACT
TCGGATTTTTTCTAACTGGGGCCATCCTGAGTATACCTGTCTGTATCGGTTCAGAGTTCATGGCGAACCT
GTCAAGTGA

Translation (702 aa):
MSRRSLRLATTACTLGDGEAVGADSGTSSAVSLKNRAARTTKQRRSTNKSAFSINHVSRQVTSSGVSHGG
TVSLQDAVTRRPPVLDESWIREQTTVDHFWGLDDDGDLKGGNKAAIQGNGDVGAAAATAHNGFSCSNCSM
LSERKDVLTAHPAAPGPVSRVYSRDRNQKWKAASGVFWWLGIGWYQFVTLISWLNVFLLTRCLRNICKFL
VLLIPLFLLLAGLSLRGQGNFFSFLPVLNWASMHRTQRVDDPQDVFKPTTSRLKQPLQGDSEAFPWHWMS
GVEQQVASLSGQCHHHGENLRELTTLLQKLQARVDQMEGGAAGPSASVRDAVGQPPRETDFMAFHQEHEV
RMSHLEDILGKLREKSEAIQKELEQTKQKTISAVGEQLLPTVEHLQLELDQLKSELSSWRHVKTGCETVD
AVQERVDVQVREMVKLLFSEDQQGGSLEQLLQRFSSQFVSKGDLQTMLRDLQLQILRNVTHHVSVTKQLP
TSEAVVSAVSEAGASGITEAQARAIVNSALKLYSQDKTGMVDFALESGGGSILSTRCSETYETKTALMSL
FGIPLWYFSQSPRVVIQPDIYPGNCWAFKGSQGYLVVRLSMMIHPAAFTLEHIPKTLSPTGNISSAPKDF
AVYGLENEYQEEGQLLGQFTYDQDGESLQMFQALKRPDDTAFQIVELRIFSNWGHPEYTCLYRFRVHGEP
VK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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